MmuINT0180467 @ mm9
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57565328-57566878:+
Coord C1 exon
chr14:57565328-57565453
Coord A exon
chr14:57565454-57566783
Coord C2 exon
chr14:57566784-57566878
Length
1330 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
AATATTTTTTAATTTGTCAGCTG
3' ss Score
4.29
Exon sequences
Seq C1 exon
GTGTAATTATTGAGACAGACATAATTGGCTCAGATCTTACAAAGAACTCTGACCCAGATATACAATCCAACATGCCCGATGTACCATATGAACCAGATTTGGATATTGAAATAGATTTCCCCAGAG
Seq A exon
GTACTTAAATGCTACTTTATCACTTTTAAATCAAGTTAAATAGTTGTATTTATCAGCAGTGTTTATATCATCACTTCTTGTCCTCATCCTTGTTTCTTTTTTCCATGTGTCCTTTGCAGTAGAGGATGCTGGGGGTGTGCTTTTCCACTTAGCTACATTCTTCTTCTTTTGTTTTTTATTTAAAAAGAAAAAAAAAAAAGAAAAAAGAAAGCTGAATTAATTTCAGGAACTTTAGAAACTAGAGAAAAATACAATACTTGTATTTTTTCAATTGAGAGGTATTGATAATATTAGGGTAGAGGTAGGGATCATGATAGGGTTTTGCTATAGTCCAGGCTGGCCCCCAGCTCAAAGCACTCCTTTCAGCCTCTGCTGCTGGGATTATAGGTGTGTGTCAAATGTGTAGCTTGGAAGCATTTTTCTTAATGTTCTTGAAAGTTAAATTCACATTTAAAGGGAAAAAGTAGATTTACTTCTTTAAAAGACATATGCCCTGGGTTGAAGAGATGGCTCAGCAGCTAAGAGTCCTGACTACTTTTCCAGAGGTCCTGAGTTCTCAGCAACCACATGGTGGCTTACAACCATCTGTAGTAGTATCTCATGTCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTATACTCATATAAATAAAATAAATAAATCTTAAAAAAAAAGACATATGCTCAACTGCTTCTTGGTCTTTAGTGCAGATTAGGTGAAGTGTCCCATCTGGGTGTCTTGGCTCCTCCAGTCCCAGCCCTTGACAGCAGAGGCTGAATTAGAGTTACGAGCAGCTACTATCAAGCTGTGAGGTCCATCCAGTTTAATAAGGGCCTGTCTCGAAAAAGAAAAGTATTTCAAAGCCTCATGTGATAGTACATACCTGTAGTCCTACTACAAAGCTAGGAGGATTGTAAGATGTAGACTCTGTAACATGAGTCCCAGGCCACAAGCAGACAGGTAAAAATGTGTTTCTTTTCTCATTTCCCCCTAATTTATGAATTTCCATTGAATGAAATGTCAAGCATTCCATGAAAAAGGCTTAATAGATTAAACTAGATTGGCACTTTAGATCTTCTAACTAAATTTTTGTTGTTTCCTTTTTCTAGTATCATATAGTTGTATGATTTCTGTATTTATACTTGTTACATATTGTTTTTAGTAGTATGAATAGGGTTTTTTCAAAACTCAGCACCATGTTAAGTATGCGTCTCCTTGTGCCTATCCTAGCAGAAACTTATCCTCATGTCTGAATGATCGATCCTTAATGTTTATGTAGCATAAGCTTGTACTGTTACATTTGAAATAAAATATTTTTTAATTTGTCAG
Seq C2 exon
CTGCAGAGGAGCTTGATATGGAAAATGAGTTTTTATTACCACCTGTTTTTGGAGAAGAATACGAGGAGCAGCCCAGACCTCGATCTAAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-Zmym2:NM_029498:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGACAGACATAATTGGCTCAGA
R:
TTAGATCGAGGTCTGGGCTGC
Band lengths:
206-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: