GgaINT0106904 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:183340638-183342674:-
Coord C1 exon
chr1:183342549-183342674
Coord A exon
chr1:183340733-183342548
Coord C2 exon
chr1:183340638-183340732
Length
1816 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
TTTTTTTAATGTATTTTCAGCAA
3' ss Score
7.17
Exon sequences
Seq C1 exon
ATTTTATTTTATTTACAGGTGTGATAGCTGAGTCCAATCTACTAAATTCAGAAACAGAGGCACAGACAAGCTTGCCAGATGTTCCCTATGAACCAGACCTCGATATTGAAATAGACTTTCCAAGAG
Seq A exon
GTATTTTTTCTGTCATTTTAATCAATATTGTGAAATATTATGAAATAGACATTTGGAAAAGGTAATATTTGAAATATCATGAAAATCCCTCCTTTGAGACCCTTCTTCTGAAACTGCAGCAGTAGAAACTGCTGCTTCTACTGCTCTCTGCATAATGCAGGCGGATAGTCTTTGTTGCCTTTCACTGCATCCTAATCAATCTGAGATCCAAAAAAACTCTCAGGTACAGTGCTTGACATAGCTTCTCTTGGGTGGATAACTCATACCTTCCCTGGCTAGCTTCTGTATCTGCTGTTGAAAGTCTCCTTGTGCTGTAGATAACCACACTACTTGCTCAGACTGAATTGCTCAGTTTGTTGCATGTCTAATTTGAATGTTGTCTCTTGGGATTATGAAAAAGGATTGACATTTCTCTGAGGAATACTAGCAAGATATACTGTATGTATTCTTTAGTCCTCTTTATAAGCAAGGCTTGGTACGTGAGAAGGGGGGAAAAAAAAAGGGAAGAAATTGAAGTGGAATATTAAACAATATTAGTTTATAATAGATTGTGGCCTTCCAGTACTTAAAGGGAGCTTATAAGCAGGGAGGAAATCAACTTTTTTTTAGATAGGTATAGGGCAAGAGGAAATGATTTTTAAACTGAACGAGGGCAGGTTTAGATTAGATGTCAGGGGGAAATTTTTCACTGAGAGTGGTGAGGTGCTGAAAAGTTGTGGATGCCCCATCTCTGGAGGTATTCAAGGCCAGGTTGGATGGGGCTCTGGCCTGATGGTAGTGATTGGCAACCCTTCCTGAAGCAGGGAGTTGGAACTAAATGATCTTTGAGGTCTCTTCCAACCTAGCTGTTCTGTGATTCTATGATAATTGTGTTGAAGTGCTTCTGATATTAGATAGCAAAAGAAAGGCTGGTGTTTAGTCTGGGGTAGAGTTCTTAAATCTTTGCATTTGTCTTGTATTTTATCTGGACCAGTTTTCCTTGTTGTGGTGATTAAACTTGGTAATACTTTGAGTGATGTCTTGAGTAGCAAGGTGGTGAAATTGGAATAATCTCCAGAAGAGTGTTGTTTTTAGTGAAGTCATTGTTTGGTAGTAACATGAGAGATAAAACATCTTCAGTAAAGTAAATAAATTTAGTGCTTCCAGAATTAAATCTCTTCATTCTGCTTGGTTGTCTGACGTAATAGTCCTTCATCCTAAACCTGAAATATTAAATGGCAGTATATCAAAATAGTATTTATCTGTTTATCTGTATCTGTTACTGTAACATCTGTCACAGGTTAGGCCTCTGCCTATGTAAATATGGACTATAAACAGTTTATCTGAAAGAGCTGATGCTCCAACATGTTTAAACAGAAACAGTTGTGTAAAATAAAAAGAATGAATACAGGTGATGGTCTTCCATGAACGAAGTACTTGTATTGAGCTACTTCGTATTTTTTCCATTTGTGACTTTACGTTTTCACTGTAACTTAAACATTTTCATATCAAAGCCTGCCCAGGCAGGAATAATTGTGTAAGGATCTGGGGGAAGAAATGCTGACTTAGTCATGTGAGGTGGTTTTTGAAGATGTTCAACACTGCATTCTTCTTTGCAACATATGTAGAAAGAGCACTCTGGTGGTTTTGCCTTACCCTCAAGATACAAATACATTTATTCCCTCTTGCCAGAATCCAGTTGTTATTAACATTTCATGTGTGTGCTTTTGTGTAGAATCTTTACATTAATGCACACTGATATAATTTGTTGTTTTTTCAAACCAGTATTATTCAAAAGGAGTTTAAAGTAAGGGTGGTTTTTTTAATGTATTTTCAG
Seq C2 exon
CAACTGAAGAGCTTGATACAGAAAATGAGTTTTTATTGCCTCCTGTTTTTGGGGAAGAATATGAGGAGCAGCCAAGGCCTCGTCCCAAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000027684:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGATAGCTGAGTCCAA
R:
TCTTTTTGGGACGAGGCCTTG
Band lengths:
203-2019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]