RnoINT0169118 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37214014-37215694:+
Coord C1 exon
chr15:37214014-37214139
Coord A exon
chr15:37214140-37215599
Coord C2 exon
chr15:37215600-37215694
Length
1460 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
GATATTTTCTAATTTGTCAGCTG
3' ss Score
4.29
Exon sequences
Seq C1 exon
GTGTAATTATTGAGACAGACATAATTGGCTCAGATCTTACAAAGAACTCTGACTCAGATATACAATCCAACATGCCCGATGTACCATATGAACCAGATTTGGATATTGAAATAGATTTCCCCAGAG
Seq A exon
GTACTTAAATACTACTTTATCATTATTAAATCAAGTTATATGGTTGTATTTAAGGTAATTGATCAACAGTGTTAGTAAAATTACCTCTTATCCTCATAATTGTTTCTTTTTTCCGTGTGTCCTTTGTAGTGGAGGATGCTGCATGTACTTTTCCACTTAGCTACATTCTTCCTCCTTTTCTTTTTTATTTCTCCAAATAAAACTGAATTAATTGCAGGAACTTTAGAAACTAGAGAAGAATACAATACTTGTATTTTTTCAATTCAGAGGTATTGATAGTATTAGCGTAGAGGTAGGAATCATGATAGGGTTTTGCTATATAATTCAGACTGGCCCCCAACTCAAAGCATGCCTTCTCCCAGCCTCTCATGCTGGGATTATAGGTACGTGTCAAATGTATAGCTTGGTAGCATTTTTCTTAATGTTCTTGAAAGTTAAATTCATATTTAAAGGAAAAGAAATACATTTACTTCTTTAACAGATGTATGCTCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATCAGATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAGTGGCAGTGCACTCATACATAAAGTAAATCTTTAAAATAAAAAAAGAGAGCGACACGCTCCCTTTCGCTGCTGGTTAGTGCAGATGAAGTGTAGACGTCTTCCGTCTCATACATAAAGTAAATCTTTAAAATAAAAAAAGAGAGCGACACGCTCCCTTTCGCTGCTGGTTAGTGCAGATGAAGTGTAGACGTCTTCCGTCTCGTCCGTCCGGATAGCTTGGCATGCTCTACAGTCCCAGCCCTGGGAGACGGGGGCAGAACTTAAGTTAAGGGCAGCTACTGTCAGGTTGTGAGGTCAGTCTGATTTAATTAATAAGGGTCCGTCTCAAAAAAGACAAGTGTTTGAAAGCCTTGTGATAGTACATTCCTGCAGTCCTGTTGCTAAGGTAGGAGGGTTGTGAAGTGTAGACTCTGTAAAGTAGGTTCCAGGCCACAGACAGACAAATGTGTTCCTGTTCTCATTTTCCCCTAATTTATAAATTCCTACTGAATGAAGTGTAAAGCATTCTACGAAAAAGACAAGAGATTGAACAAGATTGGCACTTTTAGATCTTCTAACTAGTTTTATAGTTGTTTTCCTTTTTCTAGTATCATACAGTTCTGTGATGCTTCTGTACTGATTGATACTTGCTACATTTGGTTTTTAGTTTATCAAATAGTTTAGCAAAACTCAACACCATGTTAAGTATGAGTCTCCCTGTGCCTCGCCTCGCTGAGACTTACCCCATGTCTGGATGATCCTTCATGTCACGGGACTCTTTATTGGCCGTGTTTATGTAGCAGAATCTTGTACTGTTATATTTGAAGTAAGATATTTTCTAATTTGTCAG
Seq C2 exon
CTGCAGAGGAACTTGATATGGAAAATGAGTTTTTATTACCACCAGTTTTTGGGGAAGAATATGAGGAGCAGCCCAGACCTCGATCTAAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGACAGACATAATTGGCTCAGA
R:
TTAGATCGAGGTCTGGGCTGC
Band lengths:
206-1666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]