HsaINT0185983 @ hg38
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20062846-20064545:+
Coord C1 exon
chr13:20062846-20062971
Coord A exon
chr13:20062972-20064450
Coord C2 exon
chr13:20064451-20064545
Length
1479 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTC
5' ss Score
6.43
3' ss Seq
AGTTCTGATTTGGTTGTCAGCTG
3' ss Score
3.68
Exon sequences
Seq C1 exon
GTGTAATTATTGAAACAGATATAATTGGTTCAGACCTTTTGAAGAACTCTGACCCAGAGACACAGTCCAGCATGCCTGATGTACCATATGAACCAGATTTGGATATCGAAATAGATTTTCCCAGAG
Seq A exon
GTACTCAAAACCTTTATGACTATGGAATTTAGTTATGGAGTCAACTGTGGTTATGATCATTTACCATTTGATGTTTGTGTCATTGCCTTTTAGCAGTGTTCATATTTTTTATTCTTGTTATTTTTTAAACTCACCTTAAGAGTTAACTTCATATTTTGTTGTTGTTTTTTTTTAAAAACCCACCTTAACAGTTAACTTCTGGAATGAGATCACTTGAGTCCAGGAGTTCAAGACCAGCCTGGGCAATGTGGTGAAACACTGTCTCTACTAAAAATATAAAAATTAGCCAGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAGGAGGTAGAGGTTGCAGTGAGCCGAGATTGTGCTACTGCACTCCAGCTTGGGCAGCAGAGTGAGACCCTGTCTTTAAAAAAAAAAAAAAAAAAAAAAATTCTAGAAGTAATTCATTATAGAAAGTTTAAAGAAGTGTTTGTGTCCTTTTTAATTTAAAAATGTTGTTAGCATCTGGGTGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACGTCGTGAAACCCCGTCTCTACTGAAAATACAAAAATTAGCTGGGCGTGGTGGTGAGTGCCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGAATTGCTTGAACTCAGGAGGCGGAGGTTGCAGTGAGCCAAGACTGCACCATTGCACTCCAACCTAGGCAACAAGAGCAAAACTCTGTCTCAAAAAATATATATATATAAAAAATATATAATATATATAATACATAAATATAATTTTATATATTATATACATCATGATGTATATAATATATAAATATATACAATATATAATATAAATATAATTTTATATATAATATATATTTTATATATATTATATAGTTTTTATATATATAATATATATAGTTAGCTTTTTTTTAAGATCCTTTGAAAATTAAGTTCACCTTCAAAGGAAAAATTATTTTCAGGTCTTTTGTAAAATAAGTGTGCCCCATTTTTCATTATTTTCTTAATCCATGGATGGCTAATGAGCACACTGAGTAGAATGTAAAACATTAGTTTTTGGAAAAAACATTTAATAGATTGAATCAGATTTGTACCAAGACCATTTAGATCTTGTAATTGGATTTCAGACTATAATAATTTTTCTGGTATCATACATTTTCATGAAAATTTTATGTTGATATTCATTTTATATATGTTTTTAGGAGTTTGAACAGTGTTTGTCAGAATTCACAAACCATGTTAGGTACAATGAGTCATTTACTCCCCAGCCCAGCCTAGATTGTCCCCATGTATGAATGCTGGTTTACATCCTGTGGTTAGTTCTTTGTTGGCTGTGTTTATGTAACCCTGTGCTATTTCATTTAAAATAAAAGTTCTGATTTGGTTGTCAG
Seq C2 exon
CTGCTGAGGAGCTTGATATGGAAAATGAATTTTTATTACCACCTGTTTTTGGCGAAGAATATGAGGAACAGCCCAGACCTCGATCTAAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741:ENST00000382870:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=NA C2=0.566
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAGATATAATTGGTTCAGACC
R:
TTTTAGATCGAGGTCTGGGCTG
Band lengths:
206-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains