DreINT0181010 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21626130-21626538:-
Coord C1 exon
chr9:21626404-21626538
Coord A exon
chr9:21626240-21626403
Coord C2 exon
chr9:21626130-21626239
Length
164 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
3' ss Seq
TTTGCTCTTGTTTATTCCAGCAT
3' ss Score
8.31
Exon sequences
Seq C1 exon
ACATCAAATGTGAAAAGGGCAGCAGTGAAGAGAAGATGGAAATTGTAAAACAGGAAAACGGTAGCGGGAGCTCAGAAGAGGAGGAGGAAGACAAGTATGAACCAGATTTGGACCTGGAGAAGGACCTACCCCTTG
Seq A exon
GTAAAGTAACTAGCAATTGAGCATGGAGGTTCTTTCTAAAGTAAAATTGTTTTAGGGCAATTGTTCCTGATCTCTGACATGAGATTATACATTTAACGAAAAACACTCTTACTAATTCACAGTTATCAGATGAAATAATTATACTTTGCTCTTGTTTATTCCAG
Seq C2 exon
CATCAGAGCCCGTTTTAGTTGAGCGTCTGGATACAGAAACACTCTTCTCATTGCCTCCAGTCCTGGCTGAGGAAAAAGAAAAGACACCTCGAACCAGAACAAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.649
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAAATGTGAAAAGGGCAGC
R:
TCTCCTTGTTCTGGTTCGAGGT
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]