BtaINT0164753 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84698896-84699643:+
Coord C1 exon
chrX:84698896-84698999
Coord A exon
chrX:84699000-84699474
Coord C2 exon
chrX:84699475-84699643
Length
475 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCCTTTCTCTTCCTCTCCAGGGT
3' ss Score
12.22
Exon sequences
Seq C1 exon
ATCCTTTGGACATTAACCCCAGTGTGGACTTCCTCTTTGATTGTGGCCTGGTAGGGCCTGAGGACGTGTCTACTGAACAAGACCTTCCCCGAGCCATGAGGAAG
Seq A exon
GTGAGGACTGGAGCTTCTATATCCACAGAAGAGGGATGGAGGCATGAAGGGCAGTGGGGTGGGTGTGGGGCTTTCGTAGCCAAATCAGAAGCCTTAGTTTCCCCTTCCCTAGCCTCCTTTCTCTACCACTGTGTGCATTGTGTTGTGTTATTCACTCAGTCATGTCCAACTCTTTGCAACCCCATGGACTGTAGCCCACCACGCTCCTCTGTCCATAGAATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTCCATTCTCCAGGGACTGTTTGCATTAAGGTACAGCCAAACTCTAGTTTCTCCCCAGTTCATCAGAGCTCATCAGAGCTGTTCCTGGGGTCCTGTGCTGTGGAAGCTTGCTGCATTCTTAAATTGGTCCCACCCCGCCCTGGTGGTGAACACTGTCCTGACTTGCTTCCACAGTGCTCCTTGCCTTACCTCTGCTACCCACTCCTTTCTCTTCCTCTCCAG
Seq C2 exon
GGTCAAAAGCGGCTGGTGCTTTCAGAGAGCTGTTCCCGGGACTCCATGAGCAGCCAGCCTAGTTGTACTGGACTCAACTATTCCTATGGTGTCAATGCTTGGAAGTGCTGGGTGCAGTCGAAATATGCCAATGGAGAAACTAGCAAGGGTGATGAGCTGCGCTTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGGACATTAACCCCAGTGT
R:
GCAGCTCATCACCCTTGCTAG
Band lengths:
262-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]