MmuINT0180492 @ mm10
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101409612-101410160:-
Coord C1 exon
chrX:101410057-101410160
Coord A exon
chrX:101409781-101410056
Coord C2 exon
chrX:101409612-101409780
Length
276 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCTTTTGTCTTCCTTTCCAGGGT
3' ss Score
12.71
Exon sequences
Seq C1 exon
ATCCTTTGGACATTAACCCAAGTGTAGACTTCCTCTTTGATTGTGGCCTTGTAGGGCCTGAGGATGTATCTACTGAACAGGACCTTCCTAGAGCCATGAGGAAG
Seq A exon
GTGAGAACTGGGGTTACTATATCCACAAAAAGAAAACGGGCTGCTTTCAGAGCCTCGAAAGAAAGCTTAATGTGACCTTCCCTGGCCTTCTTCCTCCGACGCTAGACATACTGAGACCTAGCCACCAAAGTTTGCCTTTCTCTCAGTAAACAAGAGCATCAAAGTTACTCTGGGGCTCTCTGCCAAGGACACTTTCTGTTCTTATACCAGTGCTCCCATTCCTGATGGTGCCCTGGCCTTGGTTCAACACCTTTCTCCTTTTGTCTTCCTTTCCAG
Seq C2 exon
GGTCAAAAGAGGCTGATGCTTTCTGAAAGCTGTTCCAGGGACTCTCTGAGCAGCCAGCCTAGTTGTACTGGTCTCAACTATTCATACGGTGTCAATGCTTGGAAATGCTGGGTACAGTCAAAATACGCCAATGGAGAGACCAGCAAAGGTGATGAGCTACGCTTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310:ENSMUST00000063577:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.096
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGGACATTAACCCAAGTGT
R:
GCTCATCACCTTTGCTGGTCT
Band lengths:
260-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types