GgaINT0075056 @ galGal4
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2287462-2288129:+
Coord C1 exon
chr4:2287462-2287565
Coord A exon
chr4:2287566-2287960
Coord C2 exon
chr4:2287961-2288129
Length
395 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CACAGTACACCTCTCTGCAGGGG
3' ss Score
5.4
Exon sequences
Seq C1 exon
ACCCTCTATACATCAACCCTAGTGTTGATTTCCTCTTTGACTGTGGGCTGGTGGGCCCAGAAGATGTGTCCACAGAGCAAGAGCTGCCTCGTGCTGTCCGAAAG
Seq A exon
GTGAGATCTTAATGGGTACTGCCTGCTCAAAGCCTTGTGGATTTGGAGTGGGAGCTGCCATCTGGGATGTAGTCTGAGGTGAGGTGTGCTGGGGAGGTTGTACTCCCTCCCTTCAGGGCATACTTGGCCTGGGGGCCACTCTCTGAATGGAAATATGTGCCTGTTACTGTAGAGCAGCCCTGAATGCAACATGCCATGTGAGAACCAGCCTCTTTCCTGCCTGTGGTTCTCATAACTAATGGGTCTTGTTAGCTTGGCTGTCAGCAGAAGGATGCCTGCTGGCATTGGCACAGGCACATTGGGAGGGAATGAGCTGCCAGCAAGTCTGAGGAGCAGCTGGGAATCTTGCATCTGTCCCAGGTACATGCCTAATCTCACAGTACACCTCTCTGCAG
Seq C2 exon
GGGCAGAAGCGTCTGGTGCTCTCTGAAAGCTGTTCCCGGGACTCAATGAGCAGTCAGCCCAGCTGCACAGCCCTGAACTACTCATATGGTGTGAATGCCTGGAAGTCCTGGGTGCAAGCCAAGTATGCAGGGGGAGAGACCAGCAAGGGAGAGGAGCTGCGCTTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTATACATCAACCCTAGTGT
R:
AGCTCCTCTCCCTTGCTGG
Band lengths:
262-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]