HsaINT0186008 @ hg38
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71244302-71244893:-
Coord C1 exon
chrX:71244790-71244893
Coord A exon
chrX:71244471-71244789
Coord C2 exon
chrX:71244302-71244470
Length
319 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGCTTTCTCTTCCCCTCCAGGGT
3' ss Score
11.9
Exon sequences
Seq C1 exon
ATCCTCTGGACATTAATCCCAGTGTAGACTTCCTCTTTGATTGTGGCCTGGTAGGGCCTGAGGATGTGTCTACTGAACAAGACCTTCCCCGAACCATGAGGAAG
Seq A exon
GTAGGGCTGGGGCTACTGTATGTACAAAAGAAGAATGGAGGCCCAAAGGGGAGATGATGCGAGAGCCAAGCCAGCAACCATAGTTTGACCTTCCCTAACCTCCTTTCTCCAACACTAGAAGTACTGAGATAAAGCCAAACTTTGCTCTCCCCCCATCTCACAAGGTCATCAAAGCTGTTCCTGGGGCTCTGTGCTATGGAAGCTTGCTGTGTGCTTACATCAGCCCCTGCCCCGGCCAGCAGTAAATATGGTGCTGACTAGCTTTCACCTTGCCTCTGGCCTTACCTCTGCCATGCCCCTGCTTTCTCTTCCCCTCCAG
Seq C2 exon
GGTCAAAAGCGGCTGGTGCTTTCCGAAAGCTGCTCCCGGGACTCCATGAGCAGTCAGCCTAGTTGTACCGGGCTCAACTATTCATATGGTGTCAATGCTTGGAAGTGCTGGGTGCAGTCAAAATATGCCAATGGAGAAACCAGCAAGGGTGATGAGCTGCGCTTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130:ENST00000373998:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTGGACATTAATCCCAGTGT
R:
CAGCTCATCACCCTTGCTGG
Band lengths:
262-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains