RnoINT0169143 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71303990-71304583:-
Coord C1 exon
chrX:71304480-71304583
Coord A exon
chrX:71304159-71304479
Coord C2 exon
chrX:71303990-71304158
Length
321 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCCTTTGACTTCCTTTCCAGGGT
3' ss Score
10.72
Exon sequences
Seq C1 exon
ATCCTTTGGACATTAACCCAAGTGTAGACTTCCTCTTTGATTGTGGCCTTGTAGGGCCTGAGGATGTATCTACTGAACAGGACCTTCCTAGAGCCATGAGGAAG
Seq A exon
GTGAGAACTGGGGTTACTATATCCACAAAAAGAAACCGGACAGCAAAAGGGGTAGGGCTACTCTCAGAGCCGTGCAAGAAAGCTTAATGTGACCTTCCCTGGCCTCCTTTCTCCAACGCTAGAAATACTGAGACCTAGCTCTCACAGTTTGCTTTTCTCTCAGTAAACAAGATCATCAAAGTAATTCTGGGACTCTGCCATGGAAGCTTTCCGTGGTCTTATCCCAGTGCTCCCATTTCTGATGGTGAGCGCTGTCCTGACTAGCTTCTTTGCTGCCCTGGCCTTGCTTTGCTACCTTTCTCCCTTTGACTTCCTTTCCAG
Seq C2 exon
GGTCAAAAGAGGCTGATGCTTTCTGAAAGCTGTTCCAGAGACTCTCTGAGCAGCCAGCCTAGTTGTACTGGTCTCAACTATTCATATGGTGTCAATGCTTGGAAATGCTGGGTACAGTCAAAATATGCCAATGGAGAGACCAGCAAAGGTGATGAGCTACGCTTTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTTGGACATTAACCCAAGTGT
R:
AGCTCATCACCTTTGCTGGTC
Band lengths:
262-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]