BtaINT0164786 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110912671-110914122:-
Coord C1 exon
chr3:110913993-110914122
Coord A exon
chr3:110913152-110913992
Coord C2 exon
chr3:110912671-110913151
Length
841 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCTTTTCTTTCCTGTGATAGCTC
3' ss Score
8.92
Exon sequences
Seq C1 exon
ATAAACTAACCATTGGCAAGAGGAAACGAAATGAAGATGATGATGTTCCAGTGGGTGTGGAGATGGCAGAGAATACTGATAACCCCCTCAGATGCCCAGTCCGACTTTATGAGTTTTATCTGTCCAAATG
Seq A exon
GTAAGTGATTTTCCTCTGAACTTGATACAGCACACTTCAAAAAGTAATTATTATATTTTAGATTTCAGATGCTCAAATCCCAGAAATGTAGCTGGTCTGTGACTTTAAACAAAGATTTACTTACGGTTTCATTTTTTTCCCCACTTTCATATCTGCCTGGATTTTGAACCAAGAAACAAATTGCTTTATCTTGAGCATTTTCCCCCAAAAATCTCTTAAAAAGCAAGAATCACTGTCATTGTTTATTCTGCTATGAATTTGTTATTTACATAGAAAAATAGGGGAAAGACTGTACTGCTACGTCTATAAATGAGAAAACAGTTTTTAAAGAATTGACATTTTTTGAGTGGTCTTTTTCTTACAGAAACTTTATGATTTTAAAAAGTTGCAAGATCCACACTAAAGCCAATTTTTTTCCCCAAAGAAACACAGTGACTGGGTTTGCTCTTCAGCAGAGCTGTGTGGAGTATTCTGGGGATTCATTGCAGGGTATTGGGCACTGAGGATGAGTCTCAGCCATAGTGTCACTTGTGAGTTGAATTTTTTTTTGCTCCTGGTAAGTTTTAAGTACTAATACTTGTGAAGGATTTGCATTTTGTCATCTATTAACATTATACTTACTTCGAATCCAGTGTGATTCCTGAGTGTGGGGGAAAAATATGCAGTTACAGGTTGCTCCTGGAGCATAAATGTCTATAAACTTGTTTATCTCTGTGGGTACATTGTTTACGATGTTAGTCATAGTACGAAAGATAGAGAGCCATTATACTTAAAGAGTAATTACATGTGTGCTGTACTCTCTGATCCCAGTTTTCTTTCTCTCTTTTCTTTCCTGTGATAG
Seq C2 exon
CTCTGAAAGTGTGAAGCAGAGGAATGATGTGTTTTACCTTCAGCCTGAGCGCTCCTGTGTTCCAAATAGCCCCATGTGGTACTCCACATTTCCCATAGACCCTGGGACCTTGGACACCATGTTAACACGTATTCTCATGGTGAGGGAGGTACACGAAGAACTTGCCAAAGCCAAATCAGAAGACTCTGATGTTGAGTTATCAGATTAAAGTGGAAGTAGGGTTCCTATTTTCATACGTGTTGGTATGCACCAAATTGTGAATGCATCCAGCTTTGGAAAATGATAAGTCCCAAGTCCTCTTGACTTGATTATGAGGTAATGGAGAACAGACAGCTCGTGAACCAGTGTGGATGTACAAATGGCAACTGAAGGAAAGAATGTGAGCTGAGAAACCTTGTTCTCCAGCAGTGATATTGCTCTTAGACATCTTCAGAATGACTAACCAATTTCTCTGAGTGGTGCATAATCTTATTTTGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(24.7=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCAGTGGGTGTGGAGAT
R:
GGATGCATTCACAATTTGGTGCA
Band lengths:
355-1196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]