RnoINT0169177 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144878212-144881660:-
Coord C1 exon
chr5:144881531-144881660
Coord A exon
chr5:144880698-144881530
Coord C2 exon
chr5:144878212-144880697
Length
833 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TCGTGTCTTCCTGCGGACAGCTC
3' ss Score
7.07
Exon sequences
Seq C1 exon
ATAAACTAACTATTGGCAAGAGGAAACGAAATGAAGATGAGGAGGCTCCAGTGGGTGTGGAGATGGCAGAGAACACGGACAATCCACTGAGGTGCCCTGTCCGGCTTTACGAGTTTTACCTGTCTAAATG
Seq A exon
GTAAGGGGCTTCTGTGCTTTGAGCACAGAGCGTCCCCCGCCCAGCACAGTGTGAACCTCAGGGACTGGGAACCAGAAGCACAGTTGACTGTGGCACAGGGCCAGCCTCTGCTTTCATAGTTTCTCCATCCTTTATCCGCGTGGATTTAGAACTAAGAAGTCAGCCTTGTTATCTTAATGTTTTTCTCCCAAAATTTCTCCAAAGGGGAAAAACATCACATTTCATTTGACCTTCTGAAGCACTGTTTTGTAGGGTCTTATCTATAGTGATTTATTTTTTTGTACAGAAAACAAATTCTGAGGCTGGTTTTTTGGCTAAACCTTCAAGGAGGGGAAAGCTTTGAAGAAATTGAGTTTTATATTTTAAAGAGCCAGCATCAAAACAGGCCCATCCCCATGCAGAGGGTGGCACACTTCTCCCCTTATCCACAGTCAAAGTCCAGAGTTTTGGTCAAAAAAATAGTAGTATTAAGTGGCCTCTGTAAATTGGCCCATTTAAAGTGCTTATGCTTTTTGGGGGCTGGGGCAGGGTCTCATGGTTCCCAGGCTATTCTAAGACTTGATTTGTAGTCGAGGATGACCCCTGAACTTCCTGATCCTCATTCCTCCACCGTGTGTCTGCCCCGCCCACCGCAGCACCCCAGCCGTGCGCCCTCTTTATCACAGCCTCCTCTTCCTCCTGAGGCCTGTTACCCGCTGTCCCTGTGGCTCTGGTGCCACTTACAGAGTGAGACCAGATGGGGAGCCGTCGCGAACCATTAGCTAAGGAGGGGTGATGTGTGTTCTGACCACAGCTTTCTTTTCTGTCCTGTGCTCGTGTCTTCCTGCGGACAG
Seq C2 exon
CTCTGAGAGTGTGAAGCAGAGGACCGACGTGTTCTACCTTCAGCCCGAGCGCTCGTGCGTTCCTAACAGTCCCATGTGGTACTCCACGTTCCCCATAGACCCTGGGACCCTGGACACCATGTTGACGCGCATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAGTCTGAAGACTCTGACGTGGAATTATCAGATTAAGATGGAGGGAAGCTTCCTGCTTTCATGCACACTGGTAGGCACCAAGCTGTGAATGCACTCAGCTGGTGGAAAGATGTTGAAATCCAAGTTCTCTTGACTTGCTTATTTGGTGGGAAAACAGACGGCTTCTGAGCCGTGGTGTTGCTGCAAATGAAACCTGAGGGGAGAAGTGTGGGTGAATTGGCAGGGAGAGTTCACAGACATCATGAAAGACTAACCAGTTTCTGAGTGGTGCATAGTCTTATTTTCTTTGGGAATAAGAAATTATGGAATATTTTTAAGGAAAACTGTTGTATAAAATTCTACCATGGTAACCTTAGTTAGAAGGGGGTAGCTTTGCAGTGAGACCCTGGCCGCTGCAGTAGCTACTTGAGCAAGCTGTCCATGAAAGGCAGGAGAGAGCAGAGCAGAGCTGAGAGTGCGTCAGATGAGGACAGTGGGGCTCAGCCTGGAAGAGCCAATAAAAATACTCACGTTGTTATGAAAAGATAGTGGTCTGGATTGATTTTCACTGCCACCCTACTTATGTGAAGGGTAGAAGCCTTTAGTCTTTTAACTGAAGGCCCCTCACATCAGAGGACACGCCCTTCATTACTGTCAGTGAGCCCCTTTTCACTAGGGTCCTGCTTTCTCAGCTGTGGGTAATTTAAGGTAAGAAGGATGATATTCCAGAAGCTAACTGTACACAGAAACTCTGTGGAGCCCATTAGACCCTGGTGTCTTGAAGTATTTAAAGAGAACCCACTAAAATGCCCACTTCTCTGGGTGCTGCTGTCCCGTGGCCTCAGCTGTGCAGAAGTGGGGCCTCCCTTTGTGTCCAGTTTGCCCCATGGCAGCCTTTCTTCCCTGTCTTACTTTTCTGTTCCCAAATGACGCTGCTTGTCCTTCGTACCAGCCTCTGGAGGCCCTTGTCATTTCAAAAGGAATAATCTGTCTCCATAATTCTGACAAATGTGTGGGTGATCCCACAAAGACACAGTATTATGTAGCTGTCCGAGTTACGGTAGGGAAAGTCGTCATAGGTTTCCGTGTACAAGCATTTGGAAGTTGACCTTATTGCCCCAAGAAACTTGAAAGTTAGGAATGCTGGGGCTGGAGCACGAGATGGTTGACCTTACACATCCATGCAGTCTTCTCGCTGCATTATTTCAGATTCTAGCTGTCTTAGTTCATGAGGATTGCAAGGCCTAGGTGTATGTGACATTACCAGGCTGTCTCCCGCATCTCCATTCTCAGTTTCTTTCCTACAAAATTTTGAATCAAGCTTTTAATAATGTTGGATAATTACTTAGCTTCTTTAATTGAAGTTAATCTGAGCTTACAGCAGAACTGAGAGAAGTCATAAGCTTCTCCAAAGTGTCATCTTAAAACTTCAGTATGTCCCATGTTATAGGTGGGAGTAGCAACTTGTTTGTTTTGTTTTTTTTAAACAAATAAAAGTCATTTAAATACAACAGAACTTTAAGATGGGCCTTTGACATTGTGTACTTGTGGTTCCGTCCCTCTGCTTGTAACAAATATCCTTTTTGTTACTAAAATTGTGTGAAAGAAGTAAATCTGCCCTAGTCTGTATGATTAATTCCATCTGTGTTGTCGTTTCTGATGGGGAAACGTCTTCCTTCCAGACCTCGATTGGTTGGAGGAAGGCGGTTGGCCTGTCGATAAGTCACCAATAAACCATCAGAAACACCAGGTGTCCAGTCCTGCTGTATCAGTTTGATTTGTGTAAACACTGACATTTCCCACCTATAGTTGTATGGAAAACAAACACTGTTAGCTTAGTAGATAAATTGTTATAAAATACCAAAAAGGAAAAAATATATCTGTTAAGAGGACAACTGCTACCCGGATAAATGACGTGCCAGGGCCTGAGCTGCATGTCAGTACAGGGCTTTCAGACCCTAGACTGAGTTTAAAAACTGGTTGATCATCAGTCATTCCTCGTGAGTGTAGCTGTTTGCTGTGTCAAATTATTTACTTTTTCTATTTTGTTTAAATTGTGTAAAACCATACTTACTCCCTCCTCCCTCTGGGGGAGCGAGGGAAAAAAACCCAAGAACTAGCGCCTGAGCTCTTCCCGTCCTTTAACTGTCTCTGGATTCTCCCTTCGCAGGAACCACAGAGCTATTCCCTTAGAATAAAATAGTATATTTGTATTTGATGGGTGAGTTCTTTTTCTTTGTGGTTTTAAAGAACTTTAAATACATTTTTTATTCGCTCTTATTGGTATGATCTGAGGTGTCAAATTGAAAAAAAAAAGAAAAAGAAAGCAGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(24.6=100)
A:
NA
C2:
PF120123=DUF3504=PD(26.9=67.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGATGGCAGAGAACACG
R:
CTTTCCACCAGCTGAGTGCAT
Band lengths:
355-1188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]