HsaINT0186043 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35884044-35887545:+
Coord C1 exon
chr1:35884044-35884173
Coord A exon
chr1:35884174-35885070
Coord C2 exon
chr1:35885071-35887545
Length
897 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
TTTTTTTCCCCTGTGGATAGTTC
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATAAACTGACTGTTGGCAAGAGGAAACGAAATGAAGATGATGAGGTTCCAGTGGGGGTGGAGATGGCAGAGAATACTGACAATCCACTAAGATGCCCAGTCCGACTTTATGAGTTTTACCTGTCAAAATG
Seq A exon
GTAATCTTTCTCTGAACTGAATGTAGTGCACTCAGAAGGCAGTTAACATATTTTGGATTTCAGATGCTTGAACATCAGAAAAGTAGCTTGCCCGTGGCTTTAGACAAGGATTTACCATGAATTTTTTCCCCATTGTCATATCTATGTGGATTTTGAACCACAAAACAAATTACCTTGTCTTCATAATTATTTTATGAAAATGTCTTCAAAAGCAAGAATCACTGCTATTGTTTGATCTTTACAACTGTTGTACAACCTTTATGTGATACCTAATCTGTAGTTATTTTGTTATTTGTATAGAAAAGAAATTTTGTTTTGCTAAAGCTATAATAGAAAAACAATTTTTAAGGAATTGAAATTTTCTAAGTAGTCCTTTTCTTAGAGGAACTTTATGATTTTAGAGTTGTAACACTTTTTTTTCTGAAAGAAATGTAATAGCTTCATTTGCCCTTTGATAATGTGTATTGAGTGCCCTTGGAGTTCATTCCAGGATATTGGGCACTTCCAATATGTGGTGCTTGGCCATAGTGTCACATGTGAGTTGACTTTTTTGTTGCTCTTAATAATGTTTGAAGTACTAAAGTTTATGATTTACACTTTGTCTTATATTAACTTTATACTCACTTCCAATCCATTGTGATTTCAGTTGATTCCTGGGAGGAAATATTCCTGTAAACTATTTATCTCTGTGGGTACCTTGCTTTCCCCATTGTGAGTCACAGTGGAGAAAGGTTGAGAGCCATATTAGGTTGGTGCAAAAATAATTGCAGTTTTTGCCCTTACTTTTAATTACTTTTAATGGCAAAAACCTCAGTTTACTTAAGAATAGTACATATTTCCTATACTCTCTGATTTCTAATTTTCTTTTTTCTCTTTTTTTTTTTCCCCTGTGGATAG
Seq C2 exon
TTCTGAAAGTGTGAAGCAAAGGAATGATGTGTTTTACCTTCAACCTGAGCGCTCCTGTGTCCCGAATAGCCCCATGTGGTACTCCACATTCCCGATAGACCCTGGAACCCTGGACACCATGTTAACACGTATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTGATGTTGAATTATCAGATTAAAACGGAAGTGAGGTTCTTATTTTCATACATATTGGTATGCACCAAACTGTGAATGCATCCAGCTGTTGGAAAATGATGTATAAGTCTAAGTCCTCTTGACTTGACCATAAGATCATGGAAAACAGATGACTTGTGAACCCCACAGTGTGGATGTGCAAATGAAAATTGAAGGAAAGAATATGAACTGAGAAATGTTCTTTGGCAGTGATATAGTTCTTAGACATCTTCAGAATGACTAATTTCTCCGAGTGGTGCATAATCTTATTTTGTTTGGGAGTAACAAATCGTGGAATATTTTTAAGGAAAACTGTTGTATAAAACTTTACCATAGTAACCTTAGACCTTAGAGAGGTAGCTTTGGAGTGAAACTTTGGCTGCAATAGGCTACTTTGGCAAGCCCTCCGTAAAAGTCAGAGGAGAGATCAGTACAGAGCTAAGAGTGACATCAAATGAGGACTGTGGGACCCAGATTTGAAGACCCAATAAAAATACTCAACTTTTTAAAAAAGATAGTGAAGTGGTCTTGATTGATTTTGATTTTCACTGCCAAGCCAATCATGTGAAGGACAGAAGCTTTTGCCATGGGCCCCTCACATCAGGGAAAATGACCTTCACTGCTGTTAACAGTAATGTGTCCCTTTCATTTTCTGGATCAAGCCTTCTCAGCGGTGGGTCTGGATGTGGGTAAACTAAGGTAAAGGGGATGATATTCCACAAACTAATTATGCACACAGAAAATCTGTGGAGCCTATCAGACCCCAAGTGTCTTGAAATGTTTGTAGAAACCCACTAAAATGCCCCTTCTCTGGGTGTGGGCCCTTATTGCAGCTGTCTCACAGCCTGAGCTGTGGTACAGAGAAATGGGGGTTCTCCTTTTATTTTCATTTTTTTTCCCCAATGGCAGCTTTTCTCCCGTTGTTTTACCTTCCTATTTCCCAAACAGTTCCTCTTATTTTGTCTTTTGCACCAGTTTCTGGAGGCCCTTGTCATTTCAAAAAGGATAGTCTCTTTTCTTACTCTGGCAAACCTGTGAGTGATTCCACAAAGATACAGTATTACTTAGCTATCTGAATTATGATAGAAAAGGTCCTAGTTAGGTTCCTATATAAAGCATTTGGAAGATGACCTTGTTGCCCTTGAAACTTGAAAATAGGGATTCTGGGGTGAGGATACAAAGACATTGTCTTGCATATCCATAAGCAGGTCTTAGAGCATTATTCCAAACTCTAGCTGTTTCAGTAGTTCTATGAGGATTGCAAGTCATAGGTGTGTGTGGCATATCAGTCCATCTCCCTCATCTCCATTCTCAGTTTCTTCCCCACAAAATTTGGAATCAAAGCTTTTATGACGTTTGCCAATTGCAGAACTTCTTCAGCTAAGGTTAATTTGACGCTATGATAAAACTGAGAGATGTCAAAAAGCCTCTTAGAAATTTTAATCTTGAAAGACTTTTCAGGGTATCTCATTTTTTAGGTGGGGGTGGCAGGTGTATTTCTTTTTTAACAAATAAAAGGCATTTAAGTAAAACTAAAATGAAAAAAGTAGGCCTTCTGACATTGTGTACTTGGTGGTTCTGTCCCTCTGCCTGTAACAAATCTCATTTTTGTTACCAAGAACTGTATGAAAGAAGTAAATCCACCCCGATTCTGTATGATTAATTCCATCTGTGTTTGTCATTTCTGACTGGAAAACTTCTTACTCCATACCTTGTTCGATATGGAGGACAAATAATTGGATTGTCTGATAAGTCTGCCAATAAACTATCCAGAAATAGCAAGTGTAATAGTCCCCACTATACGAATTTTATGGTTTGTATAAACACTAACATTTTCCCCTTCTGTAGTTGTATGAAAAAACAAATATTGTTAGCATAGTAGATAAATTGTTATGAAATACCAGAAAAAAAAATCTGTATCTTTTACTGAGAACACCCAATACCCAGATAAATGACTGTATCAGGATTTCATTTGCATGTTAGTCCACAGAGTTGCCCAGAACCCTAAATTTATTCATAAGAGAAAATATTGATTAATTATTGGTCATTCCTCATAAGTGTAGCTGTTGATGTGTGCGTCTGATTATTGCTTTTTTAATTTTATGAAAATTGTGTAAAATTACATTTTTTTTCCAGGGGAGAAAAAAACATCAAACAAAAACATCTAAATCATCCTTTTTGTTCTTTTTCAGTTTTTAACCACTTTTAGGTTTTCCCCTTACAGAAACCACAGAAATATTCCCTTAGAATAAAATAGTATATTTGTATTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(24.7=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGGAGATGGCAGAGAAT
R:
ACAGCTGGATGCATTCACAGT
Band lengths:
351-1248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)