GgaINT0137505 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4300142-4301633:-
Coord C1 exon
chr23:4301504-4301633
Coord A exon
chr23:4300350-4301503
Coord C2 exon
chr23:4300142-4300349
Length
1154 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTTCTTTTTACACTGACAGTTC
3' ss Score
8.46
Exon sequences
Seq C1 exon
ATAAACTGTCTGTAGGCAAAAGGAAACGCGGTGAAGATGAGGAGATTTCAACAGCAGTGGAAATGGCTGAAAATGCAGATAATCCCCTGAGATGTCCAGTGCGACTTTATGAATTTTACTTGTCAAAGTG
Seq A exon
GTAAGTGAGAGAACTTAGTCTTTAATCTGCACATAGATGAGAGCAGGAATTCAGGCAGGGACTCTCCTCAGACATGGCGTTCTTTGTGAAAGAGGGTAGGAAAAGTGTGACTTAGGCAAAAGTGATGATGGATTTTGCTTGCTGAGATGTGAGATTGATTTTTATTTAGGAGTTAGAGACTATACAGCAAGGACACAGATACAAATCATTTTGTCTTTCCTGTTCGGTATCAACTTTAGGTAGGTCTGTGAGCAGGTGGGCATGGTGTTCCTCAAAGAAAATGCACCAACAGGATGAAACAGGATCTCATTAGTGTCAGCTGAAACTCAAATAAATCACCCTCAGAAATGTACCTAGTGAGCTTCCTGCAAATAGTCCCATGGTTTTGGCAAAGGTGTGCCTAGCAGCTGTCCTGGCTCTGTTATCTCCTTATCTTCCTTGTATTCACTTGCATATCATTAGAAGATGTTAGCTGTCCTTGGGATGAGAAAACATTTTCATGCTTCTCAAAGTATATCAGCTCCTGCAGAGCCCCTGCAGTGGTACAAGCTGCAGTAAGAGTTCACTTTGCTGTTTTAATGTGAATGCTTCCAAGGCCAAGCAGGAGGGATTCTTGCTCTGGAGCTCTTTGTCCTTTCCTTCCAGCACAGAGATGTTCCTCAGTCTGATGGTCAGTCTGCCAGGCAGATGGGCTCACCGTTCTGCAGCAGGAGAAGCAAGCTAGGATTTAGTTCTGCTGATCCTCAAACATTCATTGTCCCAAAGCGCACAGCGGTTGTGGAATAGTGGGATGGGATGTTTTGTTTAGAGATTGAATGTCAGATGCATCTGTCAGTCATATAAAGACTCCAGGATTGGAGTCCAGTGTGGATCATACGACAGCTGAAGAACTGTATCTGTAAAAAAGAAGTCACAGATTGTCTTTGTTTCTTTGTAAGCAGCTAGAGCCAAGTGACCTGGGCACAGCTTAAACGTTCACAAGGCTGAAGAGGGGAAACCAATCCACTAATAAAAAGATCTTAATTATACTGCTTTAATTACAGTGTTGTAACCTCAGTGTAGCTTCCGTTTTCTTTGTTGCTTCTCCATCGCTTTTTTATGAGTAAGGCTTTTAAAGCTGCCTTCTGTAATGTGTTTTCTTTTTACACTGACAG
Seq C2 exon
TTCTGAAAGCGTGAAGCAGAGAAGTGATGTATTTTACCTTCAGCCTGAGCGCTCCTGTGTACCTAATAGCCCCATGTGGTATTCCACATTGCCAATAGACCCGGGAACTTTGGACATCATGTTAACTCGCATTCTTATGGTGAGGGAGGTACACGAAGAACTTGCCAAAGTCAAATCAGAAGACTCTGATATTGAGTTATCAGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=NA C2=0.101
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(24.7=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTAGGCAAAAGGAAACGC
R:
AGAGTCTTCTGATTTGACTTTGGCA
Band lengths:
310-1464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]