MmuINT0180529 @ mm9
Intron Retention
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126539065-126542870:-
Coord C1 exon
chr4:126542741-126542870
Coord A exon
chr4:126541562-126542740
Coord C2 exon
chr4:126539065-126541561
Length
1179 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTGTTTCCTCCTGTGGATAGTTC
3' ss Score
7.26
Exon sequences
Seq C1 exon
ATAAGGTAACTATTGGCAAGAGGAAACGAAATGAAGACGACGAGGCCCCAGTGGGAGTGGAGATGGCAGAGAACACTGACAACCCGCTGAGGTGCCCGGTTCGGCTTTATGAGTTTTACCTGTCAAAATG
Seq A exon
GTAAGGGGCTTTTCTGTGCTCTGCACACAGAGCGCTCATACCCAGCATAGCTGGCACTTCATTCAAGTGACTGGAAACTAGAAGCACAGCTGACTGTGATCCAGGGTCTGCCTCTGTTCATGTTTTCTCCATCCTTCTATCTGCCTGGATTTGGAACTAAGAAGCCAGCCATGTTATCTTAGTGTTTTTCTCCTAAAATTTCTCCAAGGGGGGGGGGGGATCACATTTTATTTGACCTTCTGACACACTGTTGTTCATCCTGTATGTAGAGTCTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTCGAGACAGGGTTTCTTTTTGTAGCCCTGGCTGTCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGCGTGTGCTATATAGATGGAGTCTTATCTATAGTGATTTATTTTTTGTGTAGAAAACAAATTCTGAGGCTGGTTTTTGGCTAAAGCCTTCAAGGAGGAGAAAGCATTTAAGAAATTTGAGTTTTGTATGTTAACGAGCCAACATCCAAACAGGCCCATCCCCAAGCTGGGAGTATATACTCTCCCCTTAGCCACCAACAGTCTGAGTCCAGAGTTTAAAGTTTTGAATTAAAGAAATTCTGATTATAATGTATGACTCACACTAAAAGTACACCTTTTTGGTCAAAGAAATAATAGCATCGAGTGACCTATGCAAATTGGCCCATTTGAAGTGAAGTACAGGATTTATGCTTCTCTCTCTCTCTCTCTCTTCTCTCTCCCTCCCTCCCTCCCTCCCTATCTCCCTCCCTCCTTCCCTCCCTTCCTTTCTTCCTTTCTTTCGAGGCAGGGTTTCATGTTTCCCAGGCTGGGTCTCAAACTTGACTTGTAGCCAAGAATGACCTTGAACTCCCCAGCCCTCATCCCCACCTTCCAAGGATTAGAACTACAGGTGTCTGCCCCACACCCGGCTGGGCTTTCTTTATCTATCACGGTCTACCACTTTCAGCTCGGTTCTGGGCCGCCCTGGGAGGAACATGCATGTTATGCCTGTGGTTCTGGTGTTACTGACAACGTGAGACGGGATGGGAAGAAGTTCAGAACTGTTACCTAAGAAAGGATGCTGTGTATTTCCCGTGTTCCCATCTCAACTTTGTTTTCTCTCTTTTGCTTGTTTCCTCCTGTGGATAG
Seq C2 exon
TTCTGAAAGTGTGAAGCAGAGGAGTGATGTGTTCTACCTTCAGCCGGAGCGCTCCTGTGTTCCTAACAGTCCCATGTGGTACTCCACATTCCCCATAGACCCTGGAACCCTGGACACCATGTTGACGCGCATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTGATGCTGAATTATCAGATTAACATGAAGGAAAGCTCCCGTTTTCATGCACACTGGTATGCACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAACGGTGGCTCTGAGCCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGACTAACCAGTTTCTGAGTGGTGCATAATCTTATTTTCTTTGGGAATAAGAAATTGTGGAATATTTTTAAGGAAAACTGTTGTATAAAATTCTACCATAGTAACCTTAGTTAGAAGGGGTAGCTTTGCAGTGAGACCCTGGCTGCAGTAGGCTACTTGAGCAAGCTGTCCATGAAAGTCAGGAGAGGTCACTGCACAGCTGAGAGTGGCATCAGATGAGGACAGGGAGACTCAGCCTGGAAGATCCAATAAAAATACTCAAGTTTTTATAAAAAAGATAGTGGTCTGGATTGATTTTCACTGCCAACCTACTTATGTGAAGGATAGAAGCCTTTAGTCTTTTAACTGAAGGCCCCTCACATCAGAGGACACGCCCTTCATTACTGTTAGTGAGCCCCTTTTCATTTAGGGTCTTGCCTTCTCAGCTGTGGGTGATTTAAGGTAAAAAGGATGATATTTCAGAAAATAACTATGTACACAGAAAATCTGTGGAGCTCATTAGACCCTGGTGTCTTGAAGTATTTATAGAAAGCCCACTAAAATGCCCGCTTCTCTGGGTGCTGCTGTCTCCTGGCCTCAGCTGGCTGCACAGAAGTGGGGCCTCCCTTTGTGTCCAGTTTTCCCCATGGCATCCTTTCTTCCCTGTCTTACTTTCCTGTCCCAAATGATGCTGCTTGTTCTTTGTCCCAGCTTCTAGAGGCCCTTGTCATTTCAAAAAGAATAATCTGTCTCCACAATTCTGACAAATGTGTGGGCGATCCCACAAAGACACAGTATTATGTAGCTGTCCGAGTTACGGTAGGGAAGATTGCAGTAGGTTCCTGTGTAAAAGCATTTGGAAGTTGACCTTATTGCCCCAGGGAACTTGCAAGTTAGGAATTGTGGGGCTGGAGTCTGAGGTGACTGACCTCACACATCCATGCGACCTTTCTGCTGCTGTATTCCAGACTCTAGCTCGCACAGGTCTATGGGAAGCGCAAGGCACAGGTGTGTGTGACATTACCAGGTGTCTCCCTCATCTCCATTCTCAGTTTCTTTCCTACAAATTTTGAATCAAGCTTTTAATAATGTTGGATAATTACTGAGCTTCTTTAATTGACGTTAACTTGAGCTTACAGCAGACCTGAGAGAAGTCATAAGCTTCTCCAGACTGTCACCTAAGACTTCAGTGTGTCCCATGTTATAGGTGGGAGTAGCAAGTTGGTTGTTTTGTTTTAAACAAATAAAGGTCACTTAAATACATCAGAACTTTAAAATGGGCCTTTGACGTTGTGTACTTAGTGGTTCTGTCCCTCTGCTTGTAACAAATATCCTTTTTGTTACTAAGAATTATGTGAAAGAAGTAATTCTGCCCCAGTCTGTATGATTAACTCCATCTGTGCTGTCATTTCTGACGGGGAAACTTCTTCCTTCCAGACCTTGATTGATCGGAGGGAAAGCAGTTGGCCTGTCTGATAAGTCACCAATAAACCATCCAAAACACCAGGTGTCATCCTGCTGTATCAGTTCTGATTTGTGTGAACACTAACATTTCCCATCTAGAGTTGTATGAAAAACAAATACTGTTAGCTTAGTATATAAATTGATATAAAATACCAAAAAGAAAAAAATGTATCTTTTAAGAGAACAACCACTATCCAGATAAACGACTGTATCGGGCTTCAGCTGCATGTTAGTGCAGGGGCTTCAGACCCTAAACTAATGTTAAAAACTGGTTGATCATCAATCATTCCTCCTGAGTGTAGCTGTTTGCTGTGTCAAATCATTTGTTTTTTTTATTTTGTTAAAATTGTGTAAAACCATACTTACTCCTTCCTCCCTCTAGGGGGAGTGAGGAACAAACCCAACAACTAGCACCTGAGCTCGGCCTGTCCCGTCCTTGGTCTCTGTCTCTGGATTTTCTCTTTGCAGGCACCACAGAACTATTCCCTTAGAATAAAATAGTATATTTGTATTTGATGGGTGAGTTCTTTTTCTTTGTTGCTTTAAAAAACTTTAAATATATTTTTTTATTTGATCTTATTGGTATGATCCAAGAGATGTAAAATTGCAAAAAAAAAGAAAGCAGCTTTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-Zmym4:NM_001114399:29
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(24.7=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAATGAAGACGACGAGGC
R:
TGTGCATGAAAACGGGAGCTT
Band lengths:
343-1522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: