DreINT0181044 @ danRer10
Intron Retention
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40523710-40526815:+
Coord C1 exon
chr19:40523710-40523839
Coord A exon
chr19:40523840-40526178
Coord C2 exon
chr19:40526179-40526815
Length
2339 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
CTGTCTTGTTTTTCCTTCAGCTC
3' ss Score
10.83
Exon sequences
Seq C1 exon
ACGGCGTTCCGGCAAAGAGGAGGAAAGAAGAGGGAGAGGAGGAGGATGAAACTGTATATGAGATAAAGGAGAATTCAGACAATCCTCTCCGCTGTCCTGTCAGGCTCTATGAGTTCTATCTCTCAAAATG
Seq A exon
GTACGTTTGATTGAAACTTGGAGCAGTTACAATAAAAAAAAAAACCCTTTTTTATTTATTTAAGTGGTCAAAAAACATACATTCATTAATCAACATCACTAACACCACAACATAAATATGAACATAGTGCTTAAACATTGTGCACATGTAAACTAAGAAAAAAACAACAACATCCGTACAATACAAGCAAACCCTGACAGCATCAGCATCATTTTGTCCACTTACAGTTAGATTTGTGTAACCTGTTTCTTTGCATTATTGTTGTTACTATTGTGGCTTTTTTTTTTTTTTACAGTATTTGCTATTTTCTTAGGACCAGATATCAGCAGAATTTAGTTCGCTCACTAGAGTGTATAGAAATAACAACATATCTTATCTATTTTAGATAGATAAATAATTCAGACTCAAAGATAAAGGTAAATAAATTAGGTAAGTATAATGTTTGAGCAAGTTAAATTATGAAAACAAAATAAACCATTGTCAAAAACAGTTCAAACACTAGAATAAAACAGTATGTGTATATAAAATATATACTGAAATCAATAAGATGTACTTGTGTTCACTAATTTTATTCAGTTAAACATGAATTTATAACTTAAAAAACCCACCACTAATATATATCCATCTAGACTCGAAACAGTGATTTTTGATCACCTTAATCCAACTAAAGTCATAACTGACCTAAACAGAAATGGAATTTAGATGTGGAGTATGCATATTTTAGTGGAATTATTGAAGTAAACACCACAGTCAAACTATTACTGTAATGTAGGACTTTTCGTCATATTTAAGACAAGATCCACACACACGGCTGTCAGTAAAGGACAGCACACACACACACACACATTGCGAAATGAGGACGTTTTATTTTTCTTTCCATTCGACATGCGTTAGTAAATTCCATAATACTCTCACCAGTCCTTACTCCTTATATGCGTCTAATACCCCAGTTTGTCAGGGGCCATGAATGAATTGAGTGAATGTGAAACTGCCGAACTGCAGTTAGTCACCCAAAATTACGTGAAACTCCTAAGGCTGATTTATACTTCTTCGTCAAGTGCATGTGTGTGCTACGACACAGCCTGCGCGTTGACGCATAGCCCTACGCCGTGTCCGTTGGCGTCGCTGATGTGCACCTCTCAAAAAATGTAACTACACGTCGCAACGACACCTAGCGCAAGCTCTGTGATTGGTCGGCTTGGTAGCGCTGACGAGTCAGGGCGGGACAGAGAGCCCAATGGAGCGATTGTTTACAAGTGTGGAGTCCCATGAAGGAGCTCCGGATGCAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTCCGCCGGTTCCTGCCTCAAAATAAGCAAGTTTGAGTCACTTGTACATCCCGGAAGCATTCAGAAAAAGCTAAACAGCGAAGAAACTCGACACAAAGGAACATTTACACCTCACTGCCCACTAGCATTTTAGAAGTGTTAATGCAGACCAACAGAGACAACGCACAGGTATAAATGCACAGCTATGCGCATTGCATGCGCCGTGGGTTACGCCGGTCACTTGACGCAGAAGTATAAACCAGGCTTTACATGAAAGCACTTCACATAAACACCTTAATTATATTATTGTCTATTAAGGCAAATAACTAGATTACAGATGTCTATGCAAGCTTAGTCAGTAGTGTCTTCACAGTAAGTGAAAGATCCAGAAGGGCATCCTGCTGATTTGATTCAGAGGGGCACTTCTTTGTCAGACTGCTCACCGGTTTACTTTTAAAGCACCCGGTCCATTTTATTTGTAAATGTTTTACTCGAACGCATAAACTCTACAGGTGCCTGATAGTCAGATGTGGAGCTAACTTTAATCACATTCACTCTTGTGAACTGCATCCATGTTAGCACGTCATCTTTATGTGGTAGTTTTTACAGTAGGAATACACACAGGTTTGAAGACTCCTTGACCTACAGTGCAATTCGGCCAGGTACACATCTACGCTAAAATATCAAGGTGAAAGTCATCACAGCTAGAATAGACCCAACTCCCAACTTAACTTTGAGAATAGATTAACAGCTGTATTTTTTTTTTTTAATCGCCTGATAAGAGTCTCGCGTTAACGCAGCACGTTAACGCCGATAACGGCCCACCACTAATATATGTCCATCTCGAATGCTTGTTCTGCCCATTTCATGATGGGATTGCTATCTGATCAGAAAAACAATATGATATTATCAGGCCCTAACAAGCTCAGAAATAAAAGCTATTACAATGAATTAAAAGCTGTCAAAAGGACTCCCAGGTTTGATCTTTGTCATTGTCAATTTTAAATATACTGTCTTGTTTTTCCTTCAG
Seq C2 exon
CTCACCGAGTGTGAGACAGCGCACGACTGATTTCTACCTGAGCCCCGAGCGCTCCTGCGTGCCCAACAGCCCCATGTGGTTCTCCATCAGCGCTCTGAGCGATGAGGCTTTAAACAGCATGTTAACCCGCATCCTCACAGTCAGAGAGCTCCATCTGGACACAGAAAAAACACCCGCTGACAACGAATCAGACAGCGACTCCGACTTCAGTCCGTGATGCTGAAAACGGTCTTGGAGAAAAGGTTTCTCTTTGGTTCTTCACTGACAAAACCTAGACACACCAGTGAACTGGCTTTTTGGAGATCCTTGGAAAGTGCTTTGTCAGTGCAGTTTCCATAATTGAAGTATAATGATATGCTGGGGTCACCGAAAACATTTCAAAAAGTGCATTTGGTTGCTCTAAAAAGGACAGAGCTGAGTTTAATGCATTGCCAGATTACACACAAGGGAACTTTAATGGGATCGCTGAAGATTCTTTGTATTATATTGAAACACTAAAGAGATTGACAGCATCTACAGCAGGTATTAATAACCGTGACTTGGTTATCTGCCCTTTGTGATTGAGATTATGTTTTTGTTTTTTATTTGCAACATTACCGCTTATCATGATTTCTTCCTTTGGATAAAAAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823:ENSDART00000140926:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.292
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(25.4=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.8=64.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]