BtaINT0164912 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015504 | ZNF131
Description
Bos taurus zinc finger protein 131 (ZNF131), mRNA. [Source:RefSeq mRNA;Acc:NM_001101218]
Coordinates
chr20:31572175-31576930:+
Coord C1 exon
chr20:31572175-31572397
Coord A exon
chr20:31572398-31576799
Coord C2 exon
chr20:31576800-31576930
Length
4402 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATTTTTTTGTATTCTAACAGGTG
3' ss Score
10.61
Exon sequences
Seq C1 exon
GAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGGGAGAGCGCGTGGAAACAGCACCTCAGTTGTTACCACCTTGAAGAAGGTGGAGTCAGTAAGAAGCAGAGAACTGGGAAAAAAATACACATATGTCAGTACTGTGAGAAGCAGTTTGACCACTTTGGACATTTTAAAGAGCATCTTCGAAAACATACAG
Seq A exon
GTAAGGAACAAATATTTTATATTAGAAGTTTATTTTTTTCCACACTCATTTCAAGCTGAGTGTCTAAATTCTTTTTTATTAGCGTTATAGAAACCATTTCGTATGTTTCCTAATGTGTAGGCTGAGCACAGTGTTTTTATAATACTAGTTTATTGATATTGATGCTATCAAAGCAAAATCAGTATTAACTTTGAAGTTAATTGTCATTCTTACACCTTGCCAATTTTTGTATTTTTAAAAGATATACATAAACACTGTGATTATTATTAGATTATTAATTATGAAATTTTAATTATATGAAACTTCACTGTTAACTGTTTTTACTTTATCTGCCTTATGTTAACACATTACATAGATGAATACATTTACAAACAATCCCAAACACGTTTATACCTTTGCAAACATTTGCTTATCTATTTTGACCTGGCGGATAGGTAGGCAGTATTTGCCCATCTCCGTCATCTCTCCAAGGCAAACATGTCAGGACTGGTGGACAGCCAAGGAGGTGAAAAGAGTAAGGTTTCTGTACTTTAGGTCATGGAGATTTAGAGTACCTGCCTTCAAGGAGTTCAAAGTTTTGTGAAGAGAGACAGGCAGGCACAGTCAGCTAAGTGCTGATAGAGGTAAGCACAGAGTATTACGAGAATGCCTGCTTATGCTGTTATGGTGGAAGACAAGGATGGCTTCCTAGAGGGTTTATCCTGTGATGATTCTCAAAGGAAAAGGAGTTAGCCAGGAGACGAGCCCTCCAGGCAAAAGAAGCTAAGTGTACAGACATGAGGAGAGAAAAGTCACTCATATGGAGTACTTGTTAGCAGGTTATTATGGCTGGAGAATTGGGTCCAATTAGAGGAATGCCAGGAGATGCAGCTGAAGAGTTTTGGGGCTGACTGTATGATATACACTTTGGCATCATGGATCATCTGCCAGTGGTTCAAGGACAGGAGAGAGAAAGTGATGGGAGATGAGGCTAAGATCATGTAGTTATCTTAGATAAATGCTCTAAATGAGTTAGATTTTATCTTGAAGACTGGGTCACTTTTAAGAAATTTAACCCAGGGAGATTTCTGATTAAATTTATGCTTTAGAGACAGAACTGGCAGGATTGGAGTGGGTGGAGCCTACGGGGTCTAGTTAGGAAGTTGTTTGAGTAATCTAAACAAGGATGAGGGGTTGAATAAAGGCAGTGATATGGTAAAGGCTTGAAGGCGTAACATGAAGTAGGCAGAGTCAACAGGGTTTAGTGATTGGTGAGATGTGGAGGTAAAAGAGGGGCTTCCTTGGTGGCTCAGACAGTAAAGAATCTGCCTGCCAATGCAGGAGACTGGGTTCAATCCCCGGGTCGGGAAGATCCCCTGGAGAAGGGAATGGCAATCTGCTCCAGTATTCTTGCCTGGAGAATCCCTTGGACAGAGGAACCTGGTGGGCTGCAGTTCATGGGATCACAAAGAGTTGGACATGACTGAGCAAGTAAGGGGTAAAAGAGAAGGTGACTCCCAGCTTTCTGATATGGGTGGCTTTGTGGTCAAAAGTTTATTAAGTTAGAAAAATAAAAAAGGGTAAAATTTGGGGATGAGGGGAGAGAGCAAGATATACTGACAGCTGTACCTGTGGGACACCCAGTGTGAAAGACAACCTAAAGATGACCTGTAACCATGTTTTCAAATGATTGTTGCCTAGTTTTCCAAGGAGGTAGTATGGAATTGTAGGAAAAAATGTGGGTTTGGAAACCAGAGTTAGATTCAGGTTCCAGGTTTTTTTTTGTTTGTTTTGGCCTGACTGTGCAGCTTGTGGGATCTTAGTTCCCTGACCAGGGGTCCCACAATGAAAGCGTGGAGTCCTAAGCACTGGACTGCCAGGGAATTCCCAGGCTCCATTTCTGACATTTGTCAGCCTGATGAACTTGACTGGTCTCTTTATCGTTGGATCTCTCTCCTTATCTGTGTAAATAAGAATAATGACACCTACTTTACAGGGTTGTGACAAATAAGAGAAATTGATAAAAGCACTTTGAAGATTGTACTTTTTACACATCTAAAGTATAATTAATCTGTTACTGTTTCTAGACTAAGAAAAAGACAAACAGCATACAGTATGATGTTACACCATTTAATTTATTTTGAAATTTTTTTAATATGTGAAATATTCATGAATGTACTTTTTTTTTTCACTGTGACTGCATGGGATTTCAGTTACAGGCATGCCCTAATTTACTTCATCACTCATGATGATACAGTTTTAGGTTGTTGCTAGTCTTTTGCCATTTATTACAAATGGTGCTGCAGTAAACATACCTGTACATAATTTTTGTGTACATGTTTAAGTAACTTAATTTTTGACAGAGTTGCCAAGTCAGAGGATATGTGCATTTTAAACCTTGGCAAATATTATCAAATTGCCCTTTAAAGAAGTTAACAACAATTTTTATTTGTAGGCTTCATTTTATAGTGAAAAATTATACACTATTAAAACCATTCTAGTTAGCAATATTCCACCATTTGTGGAATTGTAAAAGAGTTTCTATACCAACAGTAATTCTAGGTGATTAGGTCTTTTCTCTCATTAATTTTTTTCATCTTATGAAAATTATATAAAAAATAAGCTATAGTTGTTTTTTCAGGGAAAAAACACAGCTCAGAGTTATTCCTTGACTGTGTCGGGTCCACGTGAGTATGAGGGTCACGTCTGGGACCTGATCACTGAGGCTCCACCTCTGAAAACTTGGTCCTGTTCTCTCCAGGCATCATCCTTTCTTGACTTCTCTCCTGCTTTCCTTCCTTTGGCTGTGGGCTCTACCTCATTTAACCTCATTTAGCCTTTTGTCCTTCGGTAGCCCTTAAACCTCATTTATCGCCCCGTTTCTGACTTCATCTTATCCTCATTATATACTTCCTGAGTCACTTTTTCTTGTACTCTAAGCACATTTCTTGGCTTTTGAACCCTACATCCTGGAATTATTGTAGTCATTTACTTCTGCTCCCTGCTGAGAACTTCCTGCAAAAATTCTTAACAGACCTTAAGTTAAACCTTTTGGTATCTGGTTTATATCTTTCCTTTCCTAATTGCCATTCTAGACCTTCAGTGCAGTACTTGAGCCCCTGTCCACACCCCAACTTAGCTGTGGAGAAACCTGTGTGGTTCCTTCATTGTCTCCTTCTTTTATTACAGAGAAAGATATTTTCCTGTTTTTCAAGGCCAATTCTGAAGCCCACATCTCAGTGTCTCCTCCAAAGCCATGTTTCACCTGTCATTCCTACTACTCTCTCCTGCTCCACTGGTTCCTTCTCCCTTAGCAAATAAGTAATGATTCTTTTCTGGCTGAAAGAACCTCTTCTGACCTGTCCCCATTGAGCCACTTCTCCTCTTTACTTCCAAGCCTTCTTGAAAGAGTTTCTGTACTGACTGTTTTCATTGACTTGCCTCACTCACTCTCCCTTACCCCCCACTGTAGTGTGGCTCTGGATTGCCCCATACCACTCAGTGTTCCTGCTAGCATACCCGAATCCCCTGTTGTCACCCTACCTGTCGTTTGTGTTTGGTTCAGCACGGTTTACTACCTCATCTTCCTGAAATTTCTTCCTTAATTTTCCTTAGTGTTCTTCTGTCTACCAGATTTTGCCACTTTGCTCTGAGTACCTCAAACTCACCAGACTCAAAACTGATTTATAATCTTTCCCAGCATACCCTACTCCACACCTCGTTAAACATCTCTGTTCTTTATTCTGGTTGGTGTTCTAAACCAGCGATCTGGGAGTCAGTATGATACCTCCCGTCTTACTCCTCACCTGCCATACTGTTTTACACCTCTGTGCCTCCTCCTGGAATAAAACTTTCCTGAACTTCTGTTTGTCCATTTTAGGCAGAATTCATCACTCCTCTGTGCTGCTACAGCCCATTGCTCATTGCTCTCTTCTCTGTACCAGGCTTTCTATGATATATTGCATTTATTTATGTCCATGTATTTCCACCTTCCTGAGATACCCTGGCCTATGATATGAAACTTTTAAAAATAATGACAATTTATCTTCATTACCTAGCACATGGCTTGGCAATACAATAAGTGCTCAGAAATTGCTGTGGAATGGAGAGGGCTGCATGTCCCTGAAAAGGAATTTCACTTTGATTTTTATCTAAGGGAAAATAGACAGTTTTTTAAGAAATGCAAAGGCATGGAAGAACATTTAGATCCAAATTTTTATTTCTTTGCCAGAGCACAGTTATAAGAATCATTAAAAACTTGTATTTCCACCTCTTAGAATAGTCTTTTAGATGTGGTGGAAACATCCAAGTTATAAGTTCTGCTCCTCCATTCAAGACAGTTCTATCAGAATTACCCAAAAAGAAAATGACGTTTTGCATTTTGTTTTTCTTGATTTGTCAATATTTTTTTGTATTCTAACAG
Seq C2 exon
GTGAAAAACCTTTTGAATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGTACCCTCAAATGTCACTTGACTGCATGCCAGACTGGAGTGGGAGCAAAAAAGGGGAGAAAGAAGCTTTATGAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015504:ENSBTAT00000038149:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=WD(100=29.3),PF134651=zf-H2C2_2=PU(38.5=13.3)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]