DreINT0181138 @ danRer10
Intron Retention
Gene
ENSDARG00000068400 | znf131
Description
zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
Coordinates
chr8:31401535-31402424:-
Coord C1 exon
chr8:31401751-31402424
Coord A exon
chr8:31401666-31401750
Coord C2 exon
chr8:31401535-31401665
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AAATAAATTTGTTTTTGTAGGTG
3' ss Score
8.02
Exon sequences
Seq C1 exon
AAGGAATGGTACTACCTCCCCCCAGCCCGGAAAGAGCAAGGCTAAGAAGAGGAAGATATCAGAGACCTCCAATGTAATCACTGAATCTCTTCCTTCAGCGGACACAGAAGCTGTTGAAATTGAGGTGGAAGTTGGCGAGGAGCACATCGAGGTTGAGGAAAGCGGTCTGGTGGAGGTGGTGGACGTGGCCCGGGGCACCACTGTACCCTCTTCAGATGACTCTGCTTTGGCTTTGCTGGCTGACATCACTAGCAAGTACCAGCAGGGAGAGCAGACACTTCACGTCATAAAAAAGGTTGATGAGACTGTAGTTGTGCAGGAGGAGGCAGTGGTGGCCTCCAAGACACTGGAGAACATTGAAGTGGTGGAGGTTCAGATCTCTCAGCTCGACAACCTTTTCCGGTGCGATAAGTGTGACCGCTGCTTCAAACTCTACTATCACCTCAAACAGCACATGAAGACTCATATCGCCTCCCCAGAAAGAGGCTTTGTTTGCAGACACTGTGGCAAAGCGTACGCCCGGGAAGGAGCCCTTAAACAGCACTTGAATAATTATCATTTTGATGCGGAGGAACAGTCCCGACGGCAGAAAAAGAAAGTGCATGTTTGCGAGTACTGTGAAAAGCAGTTTGATCATTTTGGACATTTCAAAGAGCATTTAAGGAAGCACACAG
Seq A exon
GTGTGTGGGTGAGATGTTTTGAGGAAAATTTCCATATTCAAGATTCATTTTTAAATAACTTCTCCAAATAAATTTGTTTTTGTAG
Seq C2 exon
GTGAGAAACCCTTTGAGTGTCCCGAGTGCCATGAACGTTTTGCAAGAAACAGTACGCTGAAGTGCCACATGTCAGCATGTCAAAATGGCTCTGGAGCCAAAAAAGGACGAAAGAAGCTCTATGAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068400:ENSDART00000098912:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(3.8=1.8),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=PU(38.5=4.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGACGGCAGAAAAAGAA
R:
ATGTGGCACTTCAGCGTACTG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]