GgaINT0061869 @ galGal3
Intron Retention
Gene
ENSGALG00000014859 | ZNF131
Description
NA
Coordinates
chrZ:13032061-13036185:+
Coord C1 exon
chrZ:13032061-13032402
Coord A exon
chrZ:13032403-13036054
Coord C2 exon
chrZ:13036055-13036185
Length
3652 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTTGTGTCTGTCTTCATAGGTG
3' ss Score
11.04
Exon sequences
Seq C1 exon
ATCCTTCATGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAACTGTCACACATGAACAATTTATTCCACTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAAACACCCTCTACTGAGAGTTACAAGTGTGACATATGCAATAAAAGGTACCTACGAGAGAATGCTCTGAAACAGCACCTCACCTGTTACCACCTTGATGAAGGTGGTGCCCCTAAGAAGCAAAGACCTGGCAAAAAAATACATATATGTCAGTACTGTGATAAACAGTTTGACCACTTTGGGCATTTTAAAGAGCACCTTCGGAAACACACAG
Seq A exon
GTAAGAGCACTGCTGTAGTTGTGTACTTCTGGCTTCGGCTCTAGCACTTTGGGTTTTTGCATATTTTGAGGAAGCAGAGAATATGATGATGAGATCACGTGAGTGATAGAAATACTGGGCTTCCAGTTAACACTATAATCGAAGAATCATAGAATTATATATATGATTCTGTGCTGATGGTTTTTTCCTGTTGGTATGAACTGAGGAATTGAGATTTTTTTAATTATTAAAAATACACACCTAAAGCAGAAAGATATAATGAAGCTTCTTGAGTGTATTAAACATTGTTATTAATGATTCTGTGAGGCATGTTTACTTCTTTAAAAGTACTAAACTGAGTAGCTACTTTTATTTTTACAGTTCTACTGGTACATTCTTCTGCTCAAACAGTATCTGAACTTTGAGCTTGTCAGTGTGAAATATCCTCCCATTGCAGTTTTGCCCTTGCTTTTGTCATCTGCAATTAGATTTTGTTTGTTAATTAACAGCAAAACATTTCTACCGACTGCTGTTGACTTCTGTTATTGTAAAGTCTACCTTTTTGAAATCTGAATAGCGTCTTCTGACTGCAGGATGACTCATGCTCCTTTTTTCCTTATAGCATGAGACATTAACATGCTACTTCTTCATCTCATTGAAATATCTGTCTGAATGGATATTAAGCATTATAGATAAGTAGAAAAGTAGATAACTTTTTCAGTGTAAACTATATGATCTTCCAGATGATTTTGTTTAATATGTCAGTAAGAATTTGATGGAGGGCAGCAGCTCTATTCCTTCGCAGTTTGTTGTTTTTAAAGCCTTTTAATTGGAACTTCTTCCAATCTGTGTATGAGACACCTGAATCTTGTCTATGACACTATATTTAGTCTATTCTATTCCCAGTAGCCCTTTAAAATCTGCTTTTGTAGAAAGTCCGTGGAAAATCCTTATTCTCTATAAAGTAGGGAACGTTTCTTCATTATGGCTGAACTTACTACAGGCTATATAACAAAAGTATTTTCAGATAAAAGTTTGTGGCAGATTAACAGTAAATTAGATATCTCCCTCAGGTGGTAGATGATGTGGCAGGACTGGGACAAAGTAATTCAGCAGAGAACTGAAGCAGTACAGAGAACTTTGTCAATATTTATTGGTACAACTATAACATAGAATTTAATTATTTCTGGTTTAACATTTTGAAAGCATTGGCCTTAAAATCACACCTTATTATACCACTTAATTGTGGTCTCCTAAGGTTAGTGGGAAAAATCCCACTGACCCAAGGGCATTCTGAACTGCATTCTGTATAGAATTTGTTGAATGCTATGTAAAATGAAAGTAAGTTTTCTGGAAGAAAATGTCCTACGAACTGTCTCATCCTGGTGCCTTTTGAATTGCAGCACCAGCAATAACATTAAGGTAGCAGATGCAGAAGAAATAGACTGTTCATTAATTTTGTTAATTCTTTTTGATGTAGGAATTTGACATCAGCAGAAGCTGTTCTTTGTCTCAGTAAAAGAAAGTAGAAAGGACAGCTATGGTGCTTCTCCCTAACACAGATGTACACTGCCTGAAGAATTCTCTTTTTCTTAAAAAAAAAAAGAAAAAAAAGATTGTCCTCAAGATTGTCCTGCATGTCATGTACTTCTGAAAGTACTGACAGAGTCATCTCCAGAATTCATAAAACAGAGATTTTTTTTTTGGTGTGGTGTAATGATTATCTCTTTTTCCTCCCTGCATGAGAATGAATGAGGTTTCAACTGTCAGAAGTAACACAGGACAGAAATTCTGCAAGGATGTACATATTTGGTGTATATCAATTGAAGTCAGTAGCTGTAATTTGACTTTCACAAGATGGGCAATTTCTCCATACAGAAGTCAATCCTAGATGGAAGCTGCTGCTCTCAATATGCTTGTCTAATCCTGGTATTTTGCAAAGCTTATATCCCCTAGCTAAAAGAGACAGAAGAGCTTTGATTTGCTCTGATTTTACTGAGAATTCTGTCTGCTGAATATTCCTCAAAGCTAAGCACTTGGTTTTTATAGCTTTTTTTTTTTTCTTTTTTAACTTTTATGGAGTTTATGAAGTGCTCATGAGTGAAGATGGAAGTGGAGGAGTTGTGCATGCTGTCTGCCATCCCTCTGTGCTGTACAGCCTGGGTTGTGGTGCTGATTTGTGCTGTGCAGTCACTCATCTTCTTTTGGCCCTTGGATATTGGCACTGTTATCACTGAGTTGTCACTCTTGGGTGCATTTGTCAGAATGTGTTGGAGATTACTGCAGAATTTGAGTAGCAGTAGAGTAAGTCTGCCCCTGGCTGGGCAGTGGCTTGTAGCAAGGAGCTGTTTAAGTGTGGCCAGATCACAGACCATGTGTTTAATTCTGTGCTGGGAGTTTTATGCTGTTCTGTCATCTTGGCTTATCCATGTGTAGCTGCTAGTGCACAGTCCATGATTTTGGATGTGGCAGACTGACAGCATTTTGGCACGCTCTGCATTAACTATGCAGTACACTCCAAAAACATTGCCTTCTTTAATGGATATGGGGAATATTCACACCTTTTAACTTTTTCTGTGGCCCCCAGCTGCGTGAGCTAGAATTATTGGCTACTTGTGGATTTCTGTTGAAAAGCTATGTAGGCATTTCTATGTATCTTTATTTCCGAAGATACAGATTTATTGGCTTTCCATCCTGGTGTTGACTAGCTTCCTGAAACTGCAGGCTTTTAAACTTAATTTAGCTAATGTAGATTTTTACATTGTTCTCTGAAATGCCTCAGCCTCATTAACTAGTTTTTTTTTTTTCTGTAGTTGCATTGATGGCAGCTTAATTATCAGACTTTGAGAAGAAACATACTGTTCCTAATTTTTAATGCTTTCATTTCCTTGAATTTTGTTGTATTTGTGCATGATGAAATTAGTAAACAGACAGCACTTGTTCTTTGTTATTACTTGATGACAGTCATAGTGATATGCTGCTTTTGATGGAAAAGAGCACACTGGACCTGCTTTCTGCTTTCCCTGCTGCTTTTAGCTGGCTTCCCAGTGGAAAACGCTCAGGGTTAGTGATACCAAGTTGGAAACAAAGTGACCAAAGAGAAAGGAATTTTTTTATCTTACTTGTTCCCCACTATGTCCTGCTCTTATTTCTGTTGTTCTTCCCCCCCACCCCCCCCTTTTTTTTTATGCTGATACATTGTTACTTCATGAACATCTCTGTGGGCTCCAGCATGAGCTGTTACTGTCCTTGAAAATAAAACCTTGTGGTTTTGGTTTTTTTTTAATAATTCCTTTAGTATGTCACTTTGTATAATTTCTAACATTGAATCTTCACCTGTAAATATTGGTGAGAAGACAAAAATTGCTGCTTAAGACATTAAGACATTTTGACAGAAAAGCAATCTATCTTTCATACAAACCTAAAATGTGCTTCAAACAGCACCAGCAATTATGTTGGATTGTCTTTTTCTAAATCAGACTCACAATTTCACATTAGGCTTTTGCCCTTTTATTTACATGAGTAAAAGTTACTTTTATTCTTTAGAATAGTCTGGCTAGCCAAGCCTTAACAGCATATTTATCAGCTTCTGCAAAAGCGAGAGGAGAAGGGAAAGCTGACAGAAGACTGGTTGTTTTTATGCACTTATAAATCCTTGTGTCTGTCTTCATAG
Seq C2 exon
GTGAAAAACCATTTGAATGTCCAAACTGCCACGAACGTTTCGCTAGGAATAGCACACTCAAATGTCACTTGACAGCATGTCAGTCTGGTGCTGGAGCTAAAAAGGGAAGGAAGAAGCTGTATGAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859:ENSGALT00000023979:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=19.1),PF121713=zf-C2H2_jaz=WD(100=19.1),PF134651=zf-H2C2_2=PU(38.5=8.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]