MmuINT1035484 @ mm10
Intron Retention
Gene
ENSMUSG00000094870 | Zfp131
Description
zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
Coordinates
chr13:119768706-119776449:-
Coord C1 exon
chr13:119775767-119776449
Coord A exon
chr13:119768837-119775766
Coord C2 exon
chr13:119768706-119768836
Length
6930 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTTTTTTTTTCTTACAATAGGTG
3' ss Score
9.86
Exon sequences
Seq C1 exon
GAACAAAGAAAACTCAGCTCCATTAGAGGAAAACACTACAGGAAAAAATGAGGCAAAAAAAAGAAAGATTGCAGAAACTTCAAATGTTATCACTGAATCATTACCATCTGCAGAATCAGAACCTGTGGAAATTGAGGTGGAGATTGCTGAGGGCACAATTGAAGTAGAAGATGAAGGCATCGAAGCTTTGGAGGAAATGGCTTCTGCCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGATTCCGCTCTGGCGTTGTTGGCAGATATCACCAGCAAGTACCGTCAAGGTGAAAGCAAAGGACAGATTAGCGAAGATGACTGTGCATCTGACCCCATAAGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGTGAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGAGAGAGTGCGTGGAAACAGCACCTTAACTGTTACCACCTTGAAGAAGGTGGAGTAAGTAAGAAGCAAAGAACTGGGAAAAAAATTCACATATGCCAGTACTGTGACAAACAGTTTGACCACTTTGGACACTTTAAAGAACACCTTCGAAAACATACAG
Seq A exon
GTAATTAGCAAATACTTTGTTTCAAATATTTTTTTTTCTACTTTCAATTGAAATCTAAATCCTGTTTTTCCCTCTGTATTTTCTGATGAGCATGGTACATACTGATTTCTTGATGCTTTAAATGGAAATCAGTGTCAACCTTAAAAATGATTGTTGTTTTATGTCTTGCCCTTTTTTATATTCTTTAAAGAAATATGTAAAATAGATTATAGTTTATTTGCTAAGTACCATGAATTATTAAATTTTAGTTATTATGTGAAATTATTATTTTGCTTTCCATGTTAACATGTTACATAGATAACATTTATAAGCAATCTAACAAATTTATATTTTTTTTTCTTTTTGAAGGGGCATACATTTATAATCCTCTTTAGGAATATGTACTGTATTCTGTGGATGTTGAATTTGCATGTGGGTATGTTTATACTCTTGGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCCAAAGGTGACGGGCCTTTCCCCAGAATTTCAACTTCATTTTTGGAAGCAGGATCTCACTGAACCTGAAGTTCATCAATTCAACAAAAGTCTGATCAGGGAGCTTCAGGGATATGCCTCCACTCCACCCGTAGCCAATGCCGAAGCTACACACCACAGTGCCATCCTGGGTTTTCATGGTGTTTGGGGATTAAATCTCATATCCTGTTTGTGCAGCAGACATTTCCAGTAGTAGTGATATATTTTTGACTCAGAAAAATACAGTCATCTATGTCTGTCTCTCTCCACATCTCTTAAAGGCAAATGTGTCAGGACTAGTGGACAGCCAAGGGAGGTGAGGAACACTCACTCTTCTAAGAGTTATCTCACTCTTGAAGAGGTCCCAGGAAGCCTTTCTTTGGGCACCATAGTTCTGTGTCCATCTCCCCCTTCCCAACACACCCTTTTCCTTGCTTTTATTCCCCTAGCATTTCTTGCTAGGTTTCCTAAGTCACACACAGGAAGGACCTACTACCAATGACTTAATATTTTGCTAGGCTCTAAACCCCCTGTAATAGGATGGAGAAAGCTATTACCACGAGCTGCTAAGTGTTAGCTTTCTGAACAGTTGTGCTTGAGGTTTGTTACATACAGTGATTAAGGCTATTTGGAGTGTTGATACTGGAAATAGAACATAGGTACATACACCATGCAGGGTCTGTTTTTTTGATGCTGGAATTTGGACAGCTACTAGTGTTGATTGTTTTTTGGTTTGGTTTTTTTTAAAATAGCTGTCTCACTGCCCTGAGTTGTTTATATACTGATTGAACTTGAAGAATCAGATAGATTCAGAAAATGTGTTATTCCTCAAGATCCAGCTCCAATTATGATGACTCACAGGAAAAGAAGTTAGCCTGAAAACAGGTTTTCAAGCAAGAAATAAGACACACAGGAAAGTGTGAAAGCAAGTTATTTTCATTGTTAGTGGAAGGATGGATGACTTCAGAGTTGGATCAAAGTAGAGGAATACCAAGAGATTGCTAGAGCAAGCCACCTGGGCAGCACACAGGGTCTGCAAGTGGTTCATGGGCGATGGGTGGGAGCAGCAAGAGAAGGGAGCCTTTTCATCCTGTGCTTTTTCTTCATTTAGCAGAGCAAACACGGGGCTGGCGCACTTTATGTTGTAGGTCTCTCAAGATGATGTGAGATAACTGAAGTAACTTAATTAGATTTGCTACTTATTTAGATTATAGAGCCATATGCTCAGTGTATGGTCCATTAAGTACCAAAGCAAACTGAACTTTGACTTGTAGGCTTAAATGTAGAAGCAAAATGATCAGATTTCTGTTTTAGAGAGATGACTGGCAAAATAGATGGATGTGGAATAAAAGCTGCTGGCTCTAATGAGGAAGTCTCTCACAGTAATCTAAAGAACTGGAGAAGAGGTAATGGCAGCAGTAGTGAGCAGGTGGAGTGGGGCAGGGTCCACAGGATTCATGCTGCTGAGTCTTGAAGGTGAAAGATGGTGATCTCTAACTTTGTGTTGGAGTGACTCTGACTGGGATTTATTAAGAAAACATCAAGTGAAAGCCAGCAAAGGGCAAAGAGAATGCCATGTCCACTTGACATCTGTATTTGAAAAGAAGTCTTAAGGTAAATTAAAAATGTTTTTAAGTAGTTGCTCCCTATTTTCCAAAACAGTGCCGAAAATAAAAGTCACCATTGACTGTTGGCTCCCTTCCTGACAAATGCCAGTTTGACAAGCATGTTGGGTTACTTTATATTGAGGCCCCTTTCGTTGCTTTAAGGATAATGGCAGCTGTCCTGCAGATGAGACAAAAAGAAGAGTGAAATCACTCTTAACAACCAACAGTCCACACTTTCTTTTGAAAGGAAAGTCACCTGGTATTTCTAGATTTCACCAGGCTTGCTAAGCTAATTGTTTCATAGACATAGTTCAAGTGGCATGCAGTGGAAAGTGAGCTTTTCCTACTTCAGCCACTGACTAAGGAGATAACTGAGGGGAGCATTGCTTTGGCATGCGGAGCACCAGGGTTGGGGCAAGGCCAGCAGGTCAGGGGTAGAGTGTTCGCCTCCAGCCTTCAGGTGTCTTCCATGCATTCTCAAGTGATCCATCATAGCACACACACAGTTCTAGGAAAACGTGAGCAAGCATGAACAAATGGTATATCATTTAATTTTAGACTCTCTTTGGTTGGTTGGTTTTCAGAGATGGGGTTTCTCTGTGTAGCCCTTGGTTGTCTTGGAATCCACTTTATAGATTAGGCTGGCCTCAAACTCAGAGATCCTCCAGTCTCTGCTTCCTGAGTGCTGTGATTAAAGACATGTGCTACCATGCCTGTCTAGTACTAGGGGGTTTTGTTTTTGTTTTTTGAGGCAAATTTTCATTAAGTAGCTCAACTGATCCTTTTGCTTCAGCCTCCCAAGTGCTGGAATTACAGGCATGTGCAGTGATACTCTGCGTACAATCTTTTAAATTAACCACTTAACTGTGACAGTAAACTCCTATTAGCAGGTGTATGTGGTTGTAGCTCTAAGTTTTTGCTAGAGATTGCCAAGTGTGGCCTTGTAAGCATCTTTTTACACATGCTCCTGTGATACACTTTTAAAAGCTCATTTTATGTGTCTGTGCGCGCTCACTTGCCATCACCACGAGTATGCAAGCTAGAGAACAACTTGCAGGAGTTGGTTCTGTCCACTGTCTGGGTTCCAGGAGTTGAAATCAAGTCCACCAGTCTTAGCAGCCAGTCCTGAGCCATTTTCTGGCCTGTGACGTTTAGTTTTTACAAAAATAATTGCCAAGTTAAAGAAATCATGGCAAATACCAGGTTGGTTTTTATTCCCTCCTTCCTCCTCCTTTGTATTTGTGTGTGCCCAAACCTGAGGTCAACTTCAGGTGTGTCTCTTCACCTTTTTTTTAAAAGATTTATTTATTATTATATGTAAGTACACTGCAGCTGTCTTCAGACACACCAGAAGAGGGCGTTCGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCACTTAACCGCTGAGCCATCTCTCCAGCCCCCTTCACCTTATTTTTGAGACAAGAGTCTCATTGACCCTGAAGCTCACCTACTGGCTGGCTCCAGGGAGCTACCTGTGTTCATCCTACCAACACATTACCCCAGAGCTGGAGCTGCTGCTGTGCTACCACACTGGGTTCTTAGGTGGATCCGACTCAGATCTTCATGCTTACATGGCTGGCTCTGTACTGAGTCATGTTCCCAAGCCCTCCACATTGCCTTTCCAAAAGGCTCTAACAGTTTGTGCTTATCAATTTCATTGGTAATGAAGATCACACACAAATAAAACATAACCATTTTGTTGAGCATATTTCTCAAAGTTTCTTGAATTAAAAAGTTCCCATATCAACATCAATTCTAGATGTAGGTGCTAGCTAATTTTTCCCTCATGTGGCATCTCTACACAGCTGTGCTTATTGGTAGAAGAGCATGTAACTTGGTAACTTGTGTCCGTTTACTGAGTATTTTGGCATTGTCCAGAACCTCTTCCTCACCAGAGCAGTGACACCTGAAGTCTTGGTCCTGTTCTGCAAACACTATGCTGCCTTTGAATCCCCAGCCCTCGACAGCTCTCGTCCCTCTACCTCCATAGCGTTCAGCTCCTTCATCCCTTTCCGTTCATTATCATAGTTCTGATTCCCATCTTAACCTTGTTCTTGCATACAGGGATCCTACTTGTATTTAAGAACAGCCTCCATCTTGGAATCATTGCATCTCTTTACTCCTAAGGAGGGAACAGTGCTGGAGAAAATGGTCTCAAATCTTAATTGACTTTGCTTCTTGTCTGACGTATCTTTCTAATTGCTTCTTCAGATATTTGCTGTCACAGTCAAGATCCTTACACCCTACTTCCACATTAGCATTAGCATCACTCCTGTTGCCTCGTCTCCAGCAGCTTGCTTTTCTTCAAAGACCGGTCCTGAATCTTCTAACTTCACATGTCTACCAGAATCATGTCCATCTTTGTTAACTCACCCTGTCCTCCTTCCCTGCCACCTTCTGCCGAAGGAAGCCAACAAATGGTGATTCCTTTTTGATTAGGAATCTTGTCCAGTACACACACACACATACACACACTTTTAAAAAAAATAAATAAATAAAAAAGAAAGAGTTTGTGGGCTAGAGAGGTGACTCAGTGGTTAAAAGTACTGGTTGCTCTTACTGAGCTCCTGGTTCAGTCTCCAGCATGTCCCACATGGCAGCTCACACCTGCCTGTTCCAGGGTATATGTGCAGGCAAAACACGGTGCACGTGAAATAAAAATAAACATTGTAAAAATTAAAAAGAAAAAAGTGAATACACGTATCTGTTTCTGAGAACTGAGCCTGGGGGCCTTGTGCATGCCAGAGAAGCATTCTGCCGTTGAGCCTCATCCTCAGCCCCACCCCCAGGCTTCACTGAGAGAATTCTCTGCTGTTCACACTGTCGTGCTTCTTGTTAACCTCTCCATCCTGGGTGAGCCTGGCTCCTGATCCCATTGTGCCTCTGACTGCTCTCATTTTCCTTGGCATTGTTTGTCAGTCCCATTTCTTTCTGTTTCTACTGTTAACATTGTTGTTAACTTGTTTCCTCACTACTGTGTTCTCAGGGCTTTGTAATTATATAACACACTGAGAATTTTGTTCCATCTTGGAAGTATTCATTGCCACCAAAAACAACCCCTTTATCTATATATCAATCCATTGTATTTGAGTCCAGAATTGTCCATATAATAATTATCTCTTGGGCATCTCTGCTCCACTTTGAATTTCTTTTAAATTTCTCTCTTAACCTCTTGGATTTTTGTTTGTTTCTTTGATTTCATAATTGAATATGTGCAGGTGTTTTTGCCTGCATGTGTACACACAGAGGCTAGAGGGCAGCAGGTCCCCTGAGCTAAAATAGGTTGTTGTGAGCTGCCACGTGTGTGCTAGAAATCAAACCTGGGTCTTCCGGAAGAGCAGCTGCTGAACCATCTCTCTAGCCTCTCTTTTTTTTTTTTTTTTTTTTTGAGACAGTTTCATGTGGCCCAGGTGGCCTTGAATTTAATAAATATATTGTCCACAGTGACCTTGACATGCCTCCACCTCTCAAGTACTGAGTTATGGTTGTACATCATCACACCGAATTTATGTGGTATTAAGGGTTAAACCCAGGGCTTTGTGTTACTTTGCAAACAAAACCCAAAAGCCCTAAATTCATAGTCTTTCCCAGCATGACCACTCCAGACTTCATTTGAAATCCCAGGCTCTTGATACAAGGTGGCACGAAAAGCCAGAGATCTGGGAGTCGTAGTCAGCCTTCCTCCTGTGCTCTGACTGGGGTGCGCTGCTACAGTTGTCGTGGCGTTCGCTCACTCTCAGCGGGTTCCCAGGGCTTTTGCACTTACTTTATTGAAAACATTCAAAACAGGTTATTTGCTTTTTGTATTTTACTTTGGTTTTGTTAGAGACTGTCTCATGGTGTGGCACTGATTGGCCTGAACTTACCATCTCAGCCACTCTGGTATTGGATTTAAGGCACTCACCACCATGCCCCCATGCATTTTGCTTTGTGAGAGCATCTTGCTGTGTTGCCCAAATCTGTCTCAAACTCAGAATCTATCCGACCCAGCTTCTCCTAATGCTGAGATTATGGTTGTGTGGCTCCCTCCGTGTCTTTACCTTTCTACTGCATCACTTAAAATGTGGACTGATACATTTACGTGGTAAAAAGGGGGGGTGGGGGGAAGCTTAGGGAAAGGCTAGTTCTATATTTCCACACGACTCCCAAATCTGACTTAGGTTGAGTGTTCCCCTTTCTAAGGCTGTGTGAGTTAAGTCAGGCATGTGGCTCATGCCTGTAGTTGTAGCACTTGGGAGGCCAAGCCTGGGGAACATAGTGAGACTGTATTTTTAAAAAAAGAAACAGGAAAGCCTCCTGTTGTGGCACATGCCCACAATCTCCGCACTGGAGAGGCAAAGGCACATTCAAAAGAATGACCATAAGAGTTTGTGGCCAGCTAGTATATATGACAAGTCCTGCCCTGCCCGCTACAGACACACACTCACACTCAAAAAGTAAGTGTGAGGTGGGTGTGAGGTACATTAACCTTTAATCCTAGTACTTAGAAGCAGGAGGATCTCTGGATTGGAAGCCAACTTGCTCTACATACCAAGTTCCAGGACAGCCAGAACTACATAAGAGAGACTGTCTAAAAAAGAAAAATGATGTTAAAGTTGTCTAGTATGCCTCGGTGGTAAGTCGTCTTCCCAGCATACACAAAGGCTGTGGTTCAATCCCCAACACTGCAAAAGAAAAAAATGGAGAAAAAGGTGAACTCATTTGCTTTTGCTAATTTTCTTAATTTGTCAATGTATTTTTTTTTTCTTACAATAG
Seq C2 exon
GTGAAAAACCTTTTGAATGTTCAAATTGTCACGAGCGGTTTGCTAGAAATAGCACTCTCAAATGTCACCTCACTGCATGCCAAACTGGAGTAGGAGCAAAAAAGGGCAGGAAGAAGCTTTATGAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094870:ENSMUST00000177916:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(4.7=2.2),PF121713=zf-C2H2_jaz=WD(100=9.6),PF134651=zf-H2C2_2=PU(38.5=4.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types