GgaINT0061869 @ galGal4
Intron Retention
Gene
ENSGALG00000014859 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chrZ:13479254-13483725:+
Coord C1 exon
chrZ:13479254-13479942
Coord A exon
chrZ:13479943-13483594
Coord C2 exon
chrZ:13483595-13483725
Length
3652 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTTGTGTCTGTCTTCATAGGTG
3' ss Score
11.04
Exon sequences
Seq C1 exon
AAACAAAGAAAATTCATCAGCCTTAGAATCAAATCGAACAGAAGGTAAAACTAAACCGAAAAAGAGGAAGATAGCTGAAACATCTAATGTTATCACAGAATCACTGCCATCTGCAGAATCAGAGCCCGTTGAAATTGAAGTTGAGATTGCCGAGGGAACAATTGAAGTGGAAGAAGATAGCATCGAGACACTTGAGGAAGTAGCTTCTGCAGAGCAGTCCATAAAGTATATACAGACAACGGGTACATCCGATGAATCTGCCTTGGCTCTTTTGGCAGATATCACTAGCAAGTATCGTCAGGGAGAGCGAAAATGCCAGATCCAAGAAAAAGTTGACAGTGCAGCTGATCCTTCATGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAACTGTCACACATGAACAATTTATTCCACTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAAACACACTCTACTGAGAGTTACAAGTGTGACATATGCAATAAAAGGTACCTACGAGAGAATGCTCTGAAACAGCACCTCACCTGTTACCACCTTGATGAAGGTGGTGCCCCTAAGAAGCAAAGACCTGGCAAAAAAATACATATATGTCAGTACTGTGATAAACAGTTTGACCACTTTGGGCATTTTAAAGAGCACCTTCGGAAACACACAG
Seq A exon
GTAAGAGCACTGCTGTAGTTGTGTACTTCTGGCTTCGGCTCTAGCACTTTGGGTTTTTGCATATTTTGAGGAAGCAGAGAATATGATGATGAGATCACGTGAGTGATAGAAATACTGGGCTTCCAGTTAACACTATAATCGAAGAATCATAGAATTATATATATGATTCTGTGCTGATGGTTTTTTCCTGTTGGTATGAACTGAGGAATTGAGATTTTTTTAATTATTAAAAATACACACCTAAAGCAGAAAGATATAATGAAGCTTCTTGAGTGTATTAAACATTGTTATTAATGATTCTGTGAGGCATGTTTACTTCTTTAAAAGTACTAAACTGAGTAGCTACTTTTATTTTTACAGTTCTACTGGTACATTCTTCTGCTCAAACAGTATCTGAACTTTGAGCTTGTCAGTGTGAAATATCCTCCCATTGCAGTTTTGCCCTTGCTTTTGTCATCTGCAATTAGATTTTGTTTGTTAATTAACAGCAAAACATTTCTACCGACTGCTGTTGACTTCTGTTATTGTAAAGTCTACCTTTTTGAAATCTGAATAGCGTCTTCTGACTGCAGGATGACTCATGCTCCTTTTTTCCTTATAGCATGAGACATTAACATGCTACTTCTTCATCTCATTGAAATATCTGTCTGAATGGATATTAAGCATTATAGATAAGTAGAAAAGTAGATAACTTTTTCAGTGTAAACTATATGATCTTCCAGATGATTTTGTTTAATATGTCAGTAAGAATTTGATGGAGGGCAGCAGCTCTATTCCTTCGCAGTTTGTTGTTTTTAAAGCCTTTTAATTGGAACTTCTTCCAATCTGTGTATGAGACACCTGAATCTTGTCTATGACACTATATTTAGTCTATTCTATTCCCAGTAGCCCTTTAAAATCTGCTTTTGTAGAAAGTCCGTGGAAAATCCTTATTCTCTATAAAGTAGGGAACGTTTCTTCATTATGGCTGAACTTACTACAGGCTATATAACAAAAGTATTTTCAGATAAAAGTTTGTGGCAGATTAACAGTAAATTAGATATCTCCCTCAGGTGGTAGATGATGTGGCAGGACTGGGACAAAGTAATTCAGCAGAGAACTGAAGCAGTACAGAGAACTTTGTCAATATTTATTGGTACAACTATAACATAGAATTTAATTATTTCTGGTTTAACATTTTGAAAGCATTGGCCTTAAAATCACACCTTATTATACCACTTAATTGTGGTCTCCTAAGGTTAGTGGGAAAAATCCCACTGACCCAAGGGCATTCTGAACTGCATTCTGTATAGAATTTGTTGAATGCTATGTAAAATGAAAGTAAGTTTTCTGGAAGAAAATGTCCTACGAACTGTCTCATCCTGGTGCCTTTTGAATTGCAGCACCAGCAATAACATTAAGGTAGCAGATGCAGAAGAAATAGACTGTTCATTAATTTTGTTAATTCTTTTTGATGTAGGAATTTGACATCAGCAGAAGCTGTTCTTTGTCTCAGTAAAAGAAAGTAGAAAGGACAGCTATGGTGCTTCTCCCTAACACAGATGTACACTGCCTGAAGAATTCTCTTTTTCTTAAAAAAAAAAAGAAAAAAAAGATTGTCCTCAAGATTGTCCTGCATGTCATGTACTTCTGAAAGTACTGACAGAGTCATCTCCAGAATTCATAAAACAGAGATTTTTTTTTTGGTGTGGTGTAATGATTATCTCTTTTTCCTCCCTGCATGAGAATGAATGAGGTTTCAACTGTCAGAAGTAACACAGGACAGAAATTCTGCAAGGATGTACATATTTGGTGTATATCAATTGAAGTCAGTAGCTGTAATTTGACTTTCACAAGATGGGCAATTTCTCCATACAGAAGTCAATCCTAGATGGAAGCTGCTGCTCTCAATATGCTTGTCTAATCCTGGTATTTTGCAAAGCTTATATCCCCTAGCTAAAAGAGACAGAAGAGCTTTGATTTGCTCTGATTTTACTGAGAATTCTGTCTGCTGAATATTCCTCAAAGCTAAGCACTTGGTTTTTATAGCTTTTTTTTTTTTCTTTTTTAACTTTTATGGAGTTTATGAAGTGCTCATGAGTGAAGATGGAAGTGGAGGAGTTGTGCATGCTGTCTGCCATCCCTCTGTGCTGTACAGCCTGGGTTGTGGTGCTGATTTGTGCTGTGCAGTCACTCATCTTCTTTTGGCCCTTGGATATTGGCACTGTTATCACTGAGTTGTCACTCTTGGGTGCATTTGTCAGAATGTGTTGGAGATTACTGCAGAATTTGAGTAGCAGTAGAGTAAGTCTGCCCCTGGCTGGGCAGTGGCTTGTAGCAAGGAGCTGTTTAAGTGTGGCCAGATCACAGACCATGTGTTTAATTCTGTGCTGGGAGTTTTATGCTGTTCTGTCATCTTGGCTTATCCATGTGTAGCTGCTAGTGCACAGTCCATGATTTTGGATGTGGCAGACTGACAGCATTTTGGCACGCTCTGCATTAACTATGCAGTACACTCCAAAAACATTGCCTTCTTTAATGGATATGGGGAATATTCACACCTTTTAACTTTTTCTGTGGCCCCCAGCTGCGTGAGCTAGAATTATTGGCTACTTGTGGATTTCTGTTGAAAAGCTATGTAGGCATTTCTATGTATCTTTATTTCCGAAGATACAGATTTATTGGCTTTCCATCCTGGTGTTGACTAGCTTCCTGAAACTGCAGGCTTTTAAACTTAATTTAGCTAATGTAGATTTTTACATTGTTCTCTGAAATGCCTCAGCCTCATTAACTAGTTTTTTTTTTTTCTGTAGTTGCATTGATGGCAGCTTAATTATCAGACTTTGAGAAGAAACATACTGTTCCTAATTTTTAATGCTTTCATTTCCTTGAATTTTGTTGTATTTGTGCATGATGAAATTAGTAAACAGACAGCACTTGTTCTTTGTTATTACTTGATGACAGTCATAGTGATATGCTGCTTTTGATGGAAAAGAGCACACTGGACCTGCTTTCTGCTTTCCCTGCTGCTTTTAGCTGGCTTCCCAGTGGAAAACGCTCAGGGTTAGTGATACCAAGTTGGAAACAAAGTGACCAAAGAGAAAGGAATTTTTTTATCTTACTTGTTCCCCACTATGTCCTGCTCTTATTTCTGTTGTTCTTCCCCCCCACCCCCCCCTTTTTTTTTATGCTGATACATTGTTACTTCATGAACATCTCTGTGGGCTCCAGCATGAGCTGTTACTGTCCTTGAAAATAAAACCTTGTGGTTTTGGTTTTTTTTTAATAATTCCTTTAGTATGTCACTTTGTATAATTTCTAACATTGAATCTTCACCTGTAAATATTGGTGAGAAGACAAAAATTGCTGCTTAAGACATTAAGACATTTTGACAGAAAAGCAATCTATCTTTCATACAAACCTAAAATGTGCTTCAAACAGCACCAGCAATTATGTTGGATTGTCTTTTTCTAAATCAGACTCACAATTTCACATTAGGCTTTTGCCCTTTTATTTACATGAGTAAAAGTTACTTTTATTCTTTAGAATAGTCTGGCTAGCCAAGCCTTAACAGCATATTTATCAGCTTCTGCAAAAGCGAGAGGAGAAGGGAAAGCTGACAGAAGACTGGTTGTTTTTATGCACTTATAAATCCTTGTGTCTGTCTTCATAG
Seq C2 exon
GTGAAAAACCATTTGAATGTCCAAACTGCCACGAACGTTTCGCTAGGAATAGCACACTCAAATGTCACTTGACAGCATGTCAGTCTGGTGCTGGAGCTAAAAAGGGAAGGAAGAAGCTGTATGAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859:ENSGALT00000023979:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(4.7=2.2),PF0009621=zf-C2H2=WD(100=10.0),PF121713=zf-C2H2_jaz=WD(100=9.5),PF134651=zf-H2C2_2=PU(38.5=4.3)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]