BtaINT0165645 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019518 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
Coordinates
chr11:72275256-72277103:+
Coord C1 exon
chr11:72275256-72275840
Coord A exon
chr11:72275841-72275930
Coord C2 exon
chr11:72275931-72277103
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AGGTCTCACTGTCCCCACAGATG
3' ss Score
10.3
Exon sequences
Seq C1 exon
GAGACTCTCTGGGGGCCAGGCCTGGGCTTCCCTACGGGCTGAGCGACGACGAGTCTGGGGGCGGCCGCGCACTAAGTGCGGAGAGTGAAGTTGAGGAGCCAACCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCCACAGGTGAGGGGCCGTGTTGTGGGGCAGGACCGGGTGGGGGGCCCCCGCTGCCCCCACGTCTACTGTATTCATGCCGCCTCTGCGCCTTCGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACACGACACACCCGCACCCACACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGCACCCATGCAGGGCCCCCCACCCCTCCCTGCCCGACCTGTGGCTTCCGCTGCTGTGCTCCACGTCCTGCCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCAGTGCCTCGGCGACCCGAAG
Seq A exon
GTAAAAAGCCAGGACTAAAGGACCTGGGACACGGGTGGGTGGCCTTAGGGGGTACCTGTGTTCATAGCCCAGGTCTCACTGTCCCCACAG
Seq C2 exon
ATGCCCTGCTGCTTCCAGATCTGAGCCTCCATGTGTCACCAGGCGGTGCCAGCTTCCTGCCGGACTGTGGGCAGCTGCGGGGTGAAGGGGAAGGTCTGTGTGGGACTGGGTCAGAACCACTGCCAGAGCTGCTGTTCCCTTGGACCTGCCGGAACTGTGGGCAAGAGCTGGAGGAGGGGGAGGGCAGTCGACTGGGAGCAGCCACGTGTGGGCGCTGCATGCGAGGAGAGACTGGCGGTAGTGCCAGTGGGGGACCCCAGGGCCCCAGTGACAAAGGCTTCGCCTGCAGCCTCTGCCCCTTTGCCACTCATTATCCCAACCACTTGGCTCGGCACATGAAGACGCACAGTGGTGAGAAGCCCTTCCGTTGTGCCCGTTGTCCCTATGCCTCTGCTCACCTGGACAACCTGAAACGGCACCAGCGCGTCCACACGGGAGAGAAACCCTACAAGTGCCCCCTCTGCCCCTATGCCTGTGGTAACCTGGCCAACCTCAAACGTCATGGTCGGATCCACTCTGGGGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAATCAGAGTATGAACCTCAAACGCCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTGCGCCTATACCACGGGCCACTGGGACAACTACAAGCGCCACCAGAAGGTGCATGGCCATGGCGGGGCGGGAGGGCCTGGCCTCTCTGCTTCTGAGGGCTGGGCCCCACCTCACAGTCCTCCCCCAGTTCTGAGCTCTCGGGGCCCGACAGCCCTGGGCGCCACCAGTAGCCGAGCTCTCCATACAGACTCACCCTGAACTAGGTCCTTCTGTCCCAGGGCTCCATGCAGTAGTCCTGACCCTCCTGTGTTTTATACAGACGGACCAGAAGCCACCTTCTCCTTCCTCCCCCGCTGGCCAGGGGGCTCCACACTGACTCACCTAGGCACTGTATGGACCAGCCCAAACCCCATGGGCAGGGGACCCATATGGACCAGGGGGCCTTGCCTTGACTGATGCACTTCATCAGCTCAGTGAGAAGGGCCCTGTATTCATCTCCACTGCTCCCAGGGGCAGTGGAGGAACTGGCTGGGGGACTGTCCAGCCTCACACCTGTTTATTTAACTTATTTCAGTGCTTTATAATAAAGGAAACACTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019518:ENSBTAT00000025999:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=13.3),PF134651=zf-H2C2_2=WD(100=13.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGAGGCGGCATCAG
R:
GCTCAGATCTGGAAGCAGCAG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development