DreINT0181471 @ danRer10
Intron Retention
Gene
ENSDARG00000019961 | znf513
Description
zinc finger protein 513 [Source:ZFIN;Acc:ZDB-GENE-030131-9895]
Coordinates
chr20:19530241-19533183:+
Coord C1 exon
chr20:19530241-19530933
Coord A exon
chr20:19530934-19531010
Coord C2 exon
chr20:19531011-19533183
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTAATTCAACATCCTTCAGTTG
3' ss Score
4.83
Exon sequences
Seq C1 exon
CTGACATCAGTCTGCCTGGCTTCCCCCTGGGAGACGAGGAGAACTCCCCCTTCAGTCGACTCAGTATGGAGAGTGACGCTGACGACCTCCGCGCAACCGAAAGCGAACGTGAAGAGAGGGTTTCTGAGTCTGCCTTTCCCTCTTACCTTTCTTGCAGGGGCTGTGGTCAGCTCCTGGAAGACCCCTTGGGACCCGGCATGGACTTAGTGGGGCCCTACTGCATGCGCTGCTGCAAAGGGAATGTGGAAGGCATTGTGGACAGGAAGCTTTGCTCGGGCTTAGGCTTACAAGCAGAGTCTAGAGGGGGAGGGAATGAGGGGACTGGTGAGGACGGTTCCCTGAAGCTCCACTCATGCACGCTCTGTGGGTTCACATCACGCTACACTAATCATGTTAAAAGGCACATGAAGACGCACAACGGCGAAAAGCCGTACGGCTGTCCGCTGTGCTCCTACGCATCGGCACAACTAGTGAACCTGCAAAGGCACTTGCGCATACACACTGGGGAAAAGCCCTATAAGTGCAACACTTGCACATTTGCTTGTAGTTCCCTAGGGAACCTGAAGAGGCACCAGCGCATGCATGCAACCATAGGCCCGGGTCAGAGTGTCACTCAACCAGTCAGTGGCAATGGTTTAAACCACTCTACTGCAGCTCAGAAGGAAAAGGAAGCAGTTCCTGCTCCCACTGAAG
Seq A exon
GTAAGCAACATTCAGCTTTGTCTTCTTGATAGAAGTTTTTATAGAGCATTTCAGAGTTGTAATTCAACATCCTTCAG
Seq C2 exon
TTGCAGGCGCTGTTAGGTCTGTCACACGTCCCCACATGGGAAGGGATGGCAACTACTTGCAGACTTTTGATGGCCTCAGACTCGCGCAGCAAACATCAACAGGGGTGTTGCAGTCAGGACAAGCTGCTTCTCAACCTGCCGCACTACCCCCCATGTTCTTCCCCTTCACTTGTCGATTGTGTGGCATGGCCTTAGACGACGAGGACGGATCCTCAGCTCAGATCTGTGCCAAGTGCACCCTGGAGATGCTGACCAAGGACACACACGGATGCCCTGCTGAGCGAGGAGACAAGGTCTACACCTGTGCTGCCTGCCCCTTCCTCACACACTACCCGAACCACCTGGCCCGCCACATGAAAACCCACAGTGGAGAGAAGCCATACAAGTGCCCGCAGTGCGACTACGCCTCCGCGCACTTTGACAACCTCAAGCGGCACCATCGAGTGCACACTGGCGAGAAGCCCTACAAATGCCACCTGTGTGACTATGCCTGTGGCAACCTGGCTAATCTCAAGAGGCACCAGCGGGTGCATTCAGGCGCCAAACCTTTTCAGTGTGCGATCTGTAACTACAGCTGCAACCAGAGCATGAACCTGAAGCGGCACATGCTGCGCCACACAGGCGAGAAGCCTCATAAGTGCCAAGAGTGTGGCTACACCACTGGACACTGGGACAACTACAAACGGCATCAGAAAAAGCACAGCCTGGCTGGAGATGGCTGGGTTAAAGTGCCGTTGCCTGGAAATGAGGAAGAGGTGGAGGATGACGAAGAGGTTTAACCTCTTTTTGCAAGACTGCCGTCCGTATGAGATTTTACTGTAACAAGCATAAGCTTTGTTGGCTGTTGTTCTTTTCTTTTGTGCCCAGAATTATTTTAGACACTTCTTGGAATTGTCCATAAGCTGCTACATGAAGTCATGCACAAATTTAAAGAACATTACCTGAATGTCCTAATGCGGGGTTGTCCAGTTCTACTTCTGGAGAGCCAACCTTCCTGCAGACTCTAAACAAACACACCCGAAGCAGCTAATCAAGGTGTTTAGGATTACTCGAAACTTCCTGCAGGTTTGTGAGAGATGTGTAGAGTTACACTCTGAGGAAGGTGGCCCTCCAGGAACAGGTTTGGACACTTCTGATTAATGCCTTTGAACAAGGCAGTCTGTGTTACCCAAAGCTCTCTAAGAGCACCCTTAGCCTGACTGTGGTTCATTTATCAGTGCCATACACACTACAGCACCACTGCCATAGGAAAATCTTCAAGCCTGGCGCAACTTTGCATGCACTTGAGTTTACCTTGTTTGACTGTTTTGAGGTTTTATGTGATTGATCATTTGTCTAGCCTACTGGCAAAAATGCCTTCGGAGTTCAGCATTATGATGTGATTTTCGATCATCTTGTTTTTGCTCACACTAAGTCGGGGCGATTGTGTTGCCTTTTATTGTTGTGTGTGTCTTATTGACTGTGAAAATGCCATTTGTCTGAGTTTACTTGAAGAAAAATGGTGCGTAGTGGATATTCGTGTCATGCTGAACATAAAGCATTTATTTTTTAAGTTGTTCTTTGAGGAATGTTAGGCATGCATATGCCACCCATGGCATTGACAGCTATACTGAAGGATGATAGTAACCATAGGCACCATTATGCAGTTACACCTTCAGGTTGCCAAGAAATGACTGGAATTGGTGAAATCTTGTAGGGTGTGTGGTGCTTGAGTGTTTTCTCGTTATGCAGTGGTTTCATTAATGCCTTAAATATCCTCAAATAAAACCATTTGTGTTGAAACTTTTTCTCTGTCTCGACACATTTCTCATCTTTCAGTCACAGAAGAACTACATGGAAGAAAGCTACTACTAGGCCAGCAGGATGTGATTAAGATGATGAGACAGGCAATGTGTAATCCTCACACTTCCATAATGAGAGCTGTAATCCTCCCTGCAGTCTGCTGCGAACAGCACCGGTAAACATGCTAATGAAGACAGAGCCCCGGGCAGTACCAGTGCACTAACAACTATTGCAGTCATCTTCATGCTGTGAGACTGTGAGAATAAGTTTCGGAAGTGGCAGAGCTTGATTTGACCACAAAGCTCAAGTTTAAAGAAAATTTAACAATCAGATCACTGAAAAATGATTCAGGATGTTATCACAACTTTGCACTTACTACTGATGCTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019961:ENSDART00000152216:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=10.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTCTACTGCAGCTCAGA
R:
CAGCTTGTCCTGACTGCAACA
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]