RnoINT0168335 @ rn6
Intron Retention
Gene
ENSRNOG00000005298 | Zfp513
Description
zinc finger protein 513 [Source:RGD Symbol;Acc:1310456]
Coordinates
chr6:26539490-26541048:+
Coord C1 exon
chr6:26539490-26539800
Coord A exon
chr6:26539801-26539887
Coord C2 exon
chr6:26539888-26541048
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATATCTCATTGTTCCCACAGATG
3' ss Score
10.63
Exon sequences
Seq C1 exon
CCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACGCGACATACCCGCACCCATACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGCACCCACACAGGGCCTCCCACTCCTCCCTGCCCAACCTGTGGTTTCCGATGCTGTGCTCCACGACCAACCCGGCCTCCCAGTCCCACAGAGCAGGAAGGGACAATGCCCCGGCGATCAGAAG
Seq A exon
GTAAAAAGAGCACCAGAGATCTTGGGACACTGGTAGGTAGCAGTAGGGATACTTGGATTAATGGCCCATATCTCATTGTTCCCACAG
Seq C2 exon
ATGCTCTCATCCTCCCAGACCTGAGTCTCCATGTGCCACCAGGTGGTACCAGTTTCCTGCCAGATTGTGGGCAGCTGCGGGGTGAAGGGGAGGGTTTGTGTGGAACTGGATCAGAACCACTGCCAGAGCTACTGTTCCCTTGGACCTGCCGGGGCTGTGGACAAGAACTGGAGGAGGGTGAGGGCAGCAGGTTGGGAACTGCCATGTGTGGGCGCTGCATGCGAGGAGAGTCTGGAGGGGGTGGCAGTGGGGGGCCCCAGGGCCCTAGTGACAAAGGCTTTGCCTGTAGTCTATGCCCCTTTGCTACTCACTACCCCAACCACCTGGCCCGGCACATGAAGACCCACAGTGGTGAGAAGCCCTTCCGCTGTGCCCGCTGTCCATACGCCTCTGCGCATCTGGATAACCTGAAACGCCACCAGCGCGTCCACACAGGAGAAAAGCCCTACAAGTGCCCTCTCTGTCCGTATGCCTGTGGCAACCTGGCCAACCTCAAGCGTCACGGTCGTATCCACTCTGGTGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAACCAGAGCATGAACCTCAAACGTCATATGCTGCGACACACGGGCGAGAAGCCCTTCCGCTGTGCCACCTGTGCTTACACCACAGGCCACTGGGACAACTACAAGCGTCATCAGAAGGTGCATGGCCATGGTGGAGCAGGAGGGCCTGGTCTCTCTGCCCCTGAGGGTTGGGCCCCACCTCATAGCCCACCCTCTGTCTTGAGCACTCGGGGTTCAGCCGCCCTGGGTGCTACTGGTAGCAGGGCTCTTCACACAGACTCACCTTGAGTTAGGTTCTTTTTACCTGGGGCCCTAGGAATTAGCCCTACGCCTCCTGCATTTTATACAAATGGACTAGAAAACCATCTTTCCCTTTCTCCCCCGCTGGTCAGGGGCTCCACACAGAGTAACCTAGGCATTATATGGACCAGCCTGAATCCCATGGTTGGGGCCATATAGACCAGGGGGCCTTGTCTTGGCTCATGTACCTGATGAGCTAAGTGATTAGGACCTTGGATTCACCGCCACTGCTCCCAGGGGCCACGGATGAACTGGTTGGGAACTGCCCAGCCTTTTACTGTTTTAACTTATTTCAGTGCTTTATAATAAAGGAAACACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005298:ENSRNOT00000050102:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=24.8),PF134651=zf-H2C2_2=WD(100=24.8),PF134651=zf-H2C2_2=WD(100=22.9)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGGAAGGGACAATGC
R:
AGTAGCTCTGGCAGTGGTTCT
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]