HsaINT0187487 @ hg19
Intron Retention
Gene
ENSG00000163795 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:26498]
Coordinates
chr2:27600102-27601921:-
Coord C1 exon
chr2:27601334-27601921
Coord A exon
chr2:27601239-27601333
Coord C2 exon
chr2:27600102-27601238
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCAGGTCTTTGTCCCCACAGATG
3' ss Score
10.41
Exon sequences
Seq C1 exon
GAGACTCTCTGGGGGCCAGGCCTGGGCTTCCCTATGGGCTGAGCGACGATGAGTCTGGGGGCGGCCGGGCACTAAGTGCGGAGAGTGAAGTTGAGGAGCCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAGGAGGGCCGGGTGGGGGGCCCCTGCTGCCCCCACGGCTACTGTACTCATGCCGCCTCTGCACCTTCGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGAGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACACGACATACCCGCACCCACACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGTACCCACGCAGGGCCCCCCACTCCTCCCTGCCCGACCTGTGGCTTCCGCTGCTGTACTCCACGACCAGCCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCGGTGCCCCGGCGACCTGAAG
Seq A exon
GTAAGACACACCAGGGACCAAAGATCTTGGGACATGGGTGGCTGACCCTAGGAATGCTTGGATTGGATTCATAGCCCAGGTCTTTGTCCCCACAG
Seq C2 exon
ATGCTCTGCTCCTTCCAGATTTGAGCCTCCATGTGCCACCAGGTGGTGCCAGTTTCCTGCCAGACTGTGGGCAGCTGCGGGGTGAAGGGGAGGGCCTCTGCGGGACTGGATCAGAACCACTGCCAGAGCTGCTATTCCCTTGGACCTGCCGGGGCTGTGGACAAGAGCTGGAGGAGGGTGAGGGTAGTCGGCTGGGAGCTGCCATGTGTGGGCGCTGCATGCGAGGAGAGGCTGGAGGGGGTGCCAGTGGGGGGCCCCAGGGCCCCAGTGACAAAGGCTTTGCCTGTAGCCTCTGCCCCTTTGCCACTCACTATCCCAACCACCTGGCCCGGCACATGAAGACACACAGTGGTGAGAAGCCCTTCCGCTGCGCCCGCTGTCCTTATGCCTCTGCTCATCTGGATAACCTGAAACGGCACCAGCGCGTCCATACAGGAGAGAAGCCCTACAAGTGCCCCCTCTGCCCTTATGCCTGTGGCAATCTGGCCAACCTCAAGCGTCATGGTCGCATCCACTCTGGTGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAACCAGAGCATGAACCTCAAACGTCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTGCGCCTATACCACGGGCCACTGGGACAACTACAAGCGCCACCAGAAGGTGCATGGCCACGGTGGGGCAGGAGGGCCTGGTCTCTCTGCCTCTGAGGGCTGGGCCCCACCTCATAGCCCACCCTCTGTTTTGAGCTCTCGGGGCCCACCAGCCCTGGGGACTGCTGGCAGCCGGGCTGTCCACACAGACTCATCCTGAACTAGGTCCTTCTTCCCCATGTTTTATACAGACGGACCAGAAGCCACCTTTTTCTCCCCCGCTGGCCAGGGGCTCCACACAGACTAACGTAGGCACTATAAGGACCAGCCCAACCCCATGGGCGGGGGGGCCCATATGGACCAGGGGACCTTGCCTTGACTGAGGCACTTCACGAGCTCAGTGAGAAGGGCCCTGTATTCACCTCCACTGCCCCCAGGGGCTGTGGACAAACCGGCTGGGGGACTGCCCAGCCTCCCACCTGTTTATTTAACTTATTTCAGTGCTTTATAATAAAGGAAACACTAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163795-ZNF513:NM_144631:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=0.298
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=12.2)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCACAGAGCAGGAGG
R:
GCTCTGGCAGTGGTTCTGATC
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)