GgaINT0083331 @ galGal3
Intron Retention
Description
NA
Coordinates
chr3:107373952-107374697:+
Coord C1 exon
chr3:107373952-107374344
Coord A exon
chr3:107374345-107374557
Coord C2 exon
chr3:107374558-107374697
Length
213 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TGCTTCTCTTTGTCTCGCAGAGC
3' ss Score
11.01
Exon sequences
Seq C1 exon
AGGGCGGCCGCAACCAGCGCATCGTGTACACCTGCCAGCTCTGTCCCTTCGCCTCCCACTACTCCAGCCACCTCAAGCGCCACATGAAGACACACAACGGGGAGAAGCCGTTTGCGTGCCCGCAGTGTGCCTACGCCTCGGCCCAGCTGGTGAACCTGACCCGCCACCTGCGCACGCACACCGGGGAGAAGCCCTACCGCTGCACGGGCTGCAGCTTCGCCTGCAGCAGCCTGGGCAACCTCAAACGCCACGAACGGGTCCACAGCCAGGACAAGCCCTTCCAGTGTGCTGCTTGCGACTACCGCTGCAACCAGAGCCGCAACCTGAAGCGGCACATGCTCAGCCACCGCCTGCCTGAAGGCGAGGGGCAGCACCAGCAAGACAAGGACCCGG
Seq A exon
GTAAGGCGGGGCTGGGAGGGAAACCGCGGCGGGAGGGAGAGCCCCAGGGCGCAGTCCGGAGATGGGCAAGGAGCGCATCCCGCCATCTTCTGTTGTGCCGATCCCGGTGCGCGTCCTCGGGTGGCTCCCGGCCCCGTGTCGGGGCGCCATCACCACTGCGCTCTGCCAGCGCTGTGCTGCCCGCTCACATCCCTGCTTCTCTTTGTCTCGCAG
Seq C2 exon
AGCCGCTGCTGCCGAAGCTGAACCTGCACATGGGCAGCGGCAGCGGCCCCTTCCTGCCCGGCTGCGCGCGGCTGCGGGGCGAGGAGACGGCTGCGCTGCCCGAGCTGCTCTTCCCCTTTACGTGCCGCATGTGTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022853:ENSGALT00000036820:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=20.2),PF127602=Zn_Tnp_IS1595=WD(100=42.3),PF134651=zf-H2C2_2=WD(100=25.0),PF134651=zf-H2C2_2=WD(100=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTGCCTACGCCTC
R:
CCCATGTGCAGGTTCAGCTTC
Band lengths:
306-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]