MmuINT0179369 @ mm10
Intron Retention
Gene
ENSMUSG00000043059 | Zfp513
Description
zinc finger protein 513 [Source:MGI Symbol;Acc:MGI:2141255]
Coordinates
chr5:31198981-31200822:-
Coord C1 exon
chr5:31200235-31200822
Coord A exon
chr5:31200148-31200234
Coord C2 exon
chr5:31198981-31200147
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATATCTCATTGTTCCCACAGATG
3' ss Score
10.63
Exon sequences
Seq C1 exon
GAGACTCTCAGGGGGCCAGACCTGGACTTCCCTATGGGCTGAGTGACGACGAGTCTGGGGGCGGCCGCGCACTAAGTGCGGAGAGTGAAGTTGAGGAACCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGTCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAGGAGGGCCGGGTGGGGGGCCCCCGCTGCCCCCACGGCTACTGTACTCATGCCGGCTGTGCGCCTTCGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACGCGACATACCCGCACCCATACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGCACCCACACAGGGCCTCCCACTCCTCCCTGCCCAACCTGTGGCTTTCGATGCTGTGCTCCACGACCAACCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGACAATGCCCCGACGATCAGAAG
Seq A exon
GTAAAAAGAACACCAGGCATCTTGGGACATGGGTTGGTGGTGATAGGGATGCTTGGATTAATGGCCCATATCTCATTGTTCCCACAG
Seq C2 exon
ATGCGCTGATCCTGCCAGACTTGAGTCTTCATGTGCCACCAGGTGGTGCCAGTTTCCTGCCAGACTGTGGGCAGCTGCGGGGTGAAGGGGAGAGCTTGTGTGGAACTGGATCCGAACCACTGCCAGAGCTACTGTTCCCTTGGACCTGCCGGGGCTGTGGACAGGAACTGGAGGAGGGTGAGGGCAGCAGGCTGGGAGCTGCCATGTGTGGGCGCTGCATGCGAGGAGAGGCTGGAGGGGTTGCCACTGGGGGACCCCAGGGCCCTGGTGACAAAGGCTTTGCCTGTAGTTTATGCCCCTTTGCCACTCACTACCCCAACCACCTGGCTCGGCACATGAAGACTCACAGTGGTGAGAAACCCTTCCGCTGTGCCCGCTGTCCATACGCCTCTGCTCATCTGGATAACCTGAAACGGCACCAGCGCGTCCACACAGGAGAAAAGCCCTACAAGTGCCCCCTCTGTCCGTATGCCTGTGGCAACCTGGCCAACCTCAAGCGTCATGGTCGCATCCACTCTGGTGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAACCAGAGTATGAACCTCAAACGTCATATGCTGCGACACACGGGCGAGAAGCCCTTCCGCTGTGCCACCTGCGCCTATACCACAGGCCACTGGGACAACTACAAGCGTCATCAGAAGGTGCATGGCCATGGTGGAGCAGGAGGGCCTGGTCTCTCTGCCCCTGAGGGCTGGGCCCCACCTCATAGCCCACCCTCTGTTTTGAGCACTCGGGGTCCAGCAGCCCTGGGTGCTACTGGTAGCAGGGCTCTTCATTCAGACTCACCTTGAACTAACTAGGTTCTTTTACCTGGGGCTCTAGGAATTAGCCCTATGCCTCCTGCATTTTATACAAATGAACTAGAAACCACCTTTCCCTTTCTCCCCCGCTGGTCAGGGGCTCCACACAGACTAACCTAGGCACTATATGGACCAGCCTGAATCCCATGGTCAGGGGGCCATATAGACCAGGGGACTTGTCTTAGCTCACGTACCAGATGAGCTAAGTGATTAGGGCCTTGGATTCACCGCCACTGCTCCCAGAGGCTATGGATGAACTGGTTGGGAGCTGCCCAGCCTTTTACTGTTTTAACTTATTTCAGTGCTTTATAATAAAGGAAACACTAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043059:ENSMUST00000114590:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.291
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=12.2)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCCCGACGATCAGAAG
R:
AGGTCCAAGGGAACAGTAGCT
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types