BtaINT0165746 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030939 | ZNF575
Description
zinc finger protein 575 [Source:RefSeq peptide;Acc:NP_001035593]
Coordinates
chr18:52073621-52074914:+
Coord C1 exon
chr18:52073621-52073732
Coord A exon
chr18:52073733-52074193
Coord C2 exon
chr18:52074194-52074914
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCAACCCGCCTGTTCCCTAGCTC
3' ss Score
5.5
Exon sequences
Seq C1 exon
GTCCTCCCTCTAGGTTTCTGGGCCAGCAGGATGCTGGAGCGAGAGACGGAGTCTGCGGCCGGGGGCGCCGAGCCTAGTCCCACTGACAAGGAGCCTGTGATCAAAAGAGAAG
Seq A exon
GTGAGGGCGTCTCCACCCGGGGTAGGGGGCGTTCTCCAGGAATTGGGGCCAAGAGAGTCACGTATTGTGGGAACCTTAGGGTGACAGTTTGAGGGCCCAGGGTGATAACCATTTCGGATCCCTAAAACGCAACCTTCTGGGGAATCCTCCAGGTTGTCTTTGGGGGACCTCAGTGATCTTCTGTAGGGATTTCAGGGTTATCACTTGGGAGGATCCTGGAAACGAACACTTTAGTGGCTTTGGGAAAGCTTAGGTCTGGGGTTCCAGAGATGTAACTCTTTGGAGCCTGCCTTAGGAGGATGCATGGCAGTGGGTGAGGAGCAGGATCAAGCCATTTGGGGAACCTCAATATGACCCTTGAGGTGTCCAGATACCCTAGAATGTCAAGGTCTAGGGGGAGTCTGGTCTAGATTCAGGGCATTGGCTGCTTTCTGGAGCCCACCAACCCGCCTGTTCCCTAG
Seq C2 exon
CTCCCGACCAGGGCCCGCCGCAGAAGCCCAGCCAGTCTGTTCCAGAGCCCGCTGCCTCCACGGGGGCGCCTTCCCGACCCCGTCGGCGACCCCCGCCCCAGCGCCCGCACCGCTGCCCTGACTGTGACAAGGCGTTCTCGTACCCGTCCAAGCTGGCCACCCACCGGTTGGCACACGGCGGCGCCCGCCCCCACCCGTGCCCCGACTGCCCCAAAGCCTTCTCCTACCCCTCCAAGCTGGCCGCCCACCGCCTCACGCACAGCGGCGCCCGCCCGCACCCGTGCCCGCACTGCCCAAAGGCCTTTGGCCACCGCTCCAAGCTGGCAGCCCACCTCTGGACCCACGCGCCCACCCGCCCCTACCCATGCCCCGACTGCCCCAAGTCCTTCTGCTACCCCTCCAAGCTGGCGGCCCACCGCCACACGCACCATGCCACTGACGCCCGCCCCTATCCTTGCCCACACTGCCCCAAGGCTTTTTCATTCCCCTCCAAATTGGCGGCCCATCGCCTGTGCCACGACCCCCCGACCGCGCCAGGCAGCCAGGCCACCGCGCGGCACCGCTGCTCCAGCTGCAGTCAGGCGTTTGGCCAGAGACGCCTCCTACTCGTTCACCAGCGCAGCCACCAGCCGGAGAGCCCCGGGGAGCGGGAGTGAGCGCTCCTCTTGGCTCACTGGCTCCTTCTGCTGCCAGCCCCCGTCAATAAAGAGGTGGCATCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030939:ENSBTAT00000043790:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=11.0),PF0009621=zf-C2H2=WD(100=9.6),PF0009621=zf-C2H2=WD(100=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCTAGGTTTCTGGGCC
R:
GGAGGGGTAGGAGAAGGCTTT
Band lengths:
342-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development