MmuINT0179480 @ mm10
Intron Retention
Gene
ENSMUSG00000066721 | Zfp575
Description
zinc finger protein 575 [Source:MGI Symbol;Acc:MGI:2141921]
Coordinates
chr7:24583838-24586817:-
Coord C1 exon
chr7:24586654-24586817
Coord A exon
chr7:24586139-24586653
Coord C2 exon
chr7:24583838-24586138
Length
515 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCAGTTCTCCTGTCCCCCAGCCC
3' ss Score
7.2
Exon sequences
Seq C1 exon
GCCCGCACCCCTGTCTCCATGAACTTGTTAACCACTGGCGCCATCCTCGCCCCTTGCCCAGCTGCCCCTTGGTCCCTCTGCCAGCAAGATGCTGGGTGGAAGCGTGAAGTCCGAGGTCAGGGCCTCGGAACCTAGTCCCACCTGTCAGGACCCGGAGACCAAAG
Seq A exon
GTGAGAGCAGCCCAGGTTCTCATAGGGATCATTCCCCAGGAGTGACAGCCCAGGAGAACCAACGTAATGACCATTGGGGCCACCACCACCACTACCCTTAGCAGATTGTGGGGGATTATGGGTAGTGTTGGAAATGGACACTTTAGAAGCTTTCGGCACTGGCTTGGCAACTCTTTGAGGCGCTCATAGGACGTGGGGTCAGAGGGCAAGCAGAAATGTCCTCGAGTGGGACACCAGTGTGACACTTGCCTCCTCGGACACTTTGAGATACCCCTCTAGTATTAAGAGATGACAGGGCCCGACGTGGTGGCGCACACCTTTAGTTCCAGCGCTCAGGAGGTAGAGGCAGAGGGAATCCCTGTGAGTTTGGGGCCAATTGGTCTACAGAGAGTGTTCCAGGCCAGCCAAGGTTACATGGTGAGGCCCTGCTTTATACAGAGTGTTGGGAGGTGGAGCCTGGCCTGGACCCAGGGTGTGCCTGTTTCTAGAAGCCCACCAGTTCTCCTGTCCCCCAG
Seq C2 exon
CCCCACACCAGGACCTGCCGAGGCCCAACCAGCCCGCTGCCTCTGGGAGCGTGCCCTCCCGGCCCCGCCGGCGGCCCCCTCCCCAGCGCCCGCACCGCTGCCCGGATTGCCCCAAGGCCTTCTCGTACCCATCCAAGCTGGCCACGCACCGGCTAGCGCACGGCGGCACCCGCCCGCACCCGTGCCCCGACTGTCCCAAGGCCTTCTCCTACCCGTCCAAGCTGGCTGCGCACCGCCTCACGCACAGCGGAGCTCGCCCGCACTCCTGCCCGCACTGCCCCAAGGCCTTCGGCCACCGTTCCAAACTGGCGGCGCATCTCTGGACGCACGCACCCGCCCGTCCCTACCCGTGCCCCGATTGCCCCAAGTCCTTCTGCTACCCGTCCAAGTTGGCGGCCCACCGCCACACGCACCACGCCACCGACGCCCGCCCCTACCCTTGCCCGCACTGCCCCAAAGCGTTCTCGTTTCCTTCCAAACTGGCGGCCCATCGTCTGTGCCACGACCCCCCAACTGCGCCCAGCAGCCAGGCTACTGGCAGCCACCGATGCTCCAGCTGCAATCAGGCCTTTGGCCAGAGACGCCTCCTGCTGGTTCACCAACGCAGCCACCACCAGTCGGAGGGCCAGGGAGAGCGGGAGTGAACTCACCTGCCCACTCTGCCTCCATCACCTGTCAATAAAGACCTGGAATTTCTAAGCCCTGCTGTATGTGTGGACTTCCCTCTAACAGGGAGAATGGCAGGGTCTTGATACAGGTAGCCCAAGCTGGACTGGAACTTTTCTGGTAGCCTTCCAAAGCCTGGTGGTCTAGATATGTACCCAGGGTGGTTTGGGATTATTGGTTCTGCAGGAATCTGATTTAGAAGGTTGAGGGATTCTATCCCCATGCACAGAGGCAGGTGTCATCAGATTGGTGCTGGGCTCAAACCTTGGGCGGGCCTGGAGTTGTGCGGGTTGTGGTGACACTGGCCCTGAACACTCAAGCCTGTGATAAAGGCATCAGGGATGTTCACTGCGGTGTGGCCACACTGGGTACAGGCCATCACATGTCCACGGCCAGAGGCCAGTGAACAGAGGGGAATGTGTGGCCTTAGGAAAGAGGCCAGCATTGTGCGTACACGGAGCTGTGAGCACAGGAGGTGGCCACAGGAGGTGACAGAGGCAGAACCAAGGGCACATCTACTGGAGAGCTCAAGGCTGCAGTGCCTCTGAATCTCTTGGGGACCTGAGGCACACTGTCTGAAAGCACTTTGGGTTTGTGGGATGTTTGTTTTGTGATGAGGTCTCCCGTCTCCAGTCTACCCTGGGACTCTCAGGGTTCTGAGGTCTTTGTGACTGCTACACAAGCATTACACAGGCAAGCACACACGCTTTTGGATTTTTTTTCTTTCCTCCTTCTTCTATTTATGTGTACCTGAGTGTTTTCTCTGCATTATGTATATGCACATTTGTGCCTGGTGCCTGTAGGTGTGAGGGGCTCAGATCCCCTGGAATATTAGGAATAGTTGTGAGCCTCTGTGTGGGTCCTAGGACAAGAACCCAGTCCCTCTGCTAAGCAACAAGTGCTCTTAATCACAGAGCCATCTGTTAAGTCCCAATAAATACACCTTTTCCCCCCTTTGGCTGTCTGTTTATCTTTTCTTTTTTAAAAGAGAGGATTGCACTACGTAGCTTTGGAATTCACTGTGTAGACCAGGCTGCCTTCAATTTCACAGAGAACTGCTTGCTTCTGCCTCCCAAGAACAGGGAGTGTATGACAGGTCTACCCCCCCCACACACACACACACTAAACAAACATAATAAACAAAACCAAGCTGGGAGTGGTACCACACACCCATAGTTCCAGCACTCAGAGGGCAGAGGCAGAAAGACTGCAAAAGTTCAAGGCCAGTCTGGTCTGCATAGAAAGTTCCAGACCAGGCAGGGCTATCATGTGAGGCCCTATCTACAAATAAAATATACTATCAACACACATGCTAGGTTTATATGCAAGAACAAGTGTAAGATGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAGAATGCTCCTTAAGAGGGACGGGGTTTCGTTTTCTCTCGCTCTTGCTTCTTGCTCTCTTGCTTCTTGCACTCTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066721:ENSMUST00000094705:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.374
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=11.2),PF0009621=zf-C2H2=WD(100=9.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTAACCACTGGCGCCATC
R:
TAGGAGAAGGCCTTGGGACAG
Band lengths:
351-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types