HsaINT0187720 @ hg19
Intron Retention
Gene
ENSG00000176472 | ZNF575
Description
zinc finger protein 575 [Source:HGNC Symbol;Acc:27606]
Coordinates
chr19:44038489-44040284:+
Coord C1 exon
chr19:44038489-44038653
Coord A exon
chr19:44038654-44039180
Coord C2 exon
chr19:44039181-44040284
Length
527 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCAGCCCTCCTGTCCCCCAGCTC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GCCCTCCAACCCTATCCCCATCAGCCTGGTCATCACCGGCGTCACCCCCGCCCCGCGCCCTGCCCCTAGGTTCCTGTGCCAGCAAGATGCTGGAGCGAGGCGCGGAGTCCGCGGCCGGGGCTACCGATCCTAGTCCCACTGGCAAGGAACCAGTGACCAAAGAAG
Seq A exon
GTGAGAGTGCCCCGCCTGTGAGTAGGGAGCATTCTCCAGGAACGGGGGCCAAAATAATCACATTCTGGGGGAATCTCAGGGTGAAAATTTGAGGGCCCTAGGGTGATGACTATTTGGGATCCCCAAAACTGCCACATTCTGGGAAATCCTCCCATTTGGCTCAGAGAGAGCCTCAGTGACCATTTGCTAAGGCTCAGGAAATGAGCCTTACAGAAGGGACGGGTCAGGGATGACATGCGGGATGTCAGGGTGATCACTGGGAAGATACTAGAAACGGATACCTTGGTAGCTTTGAGGAAGCCTTAGTAGCTTTGGGGATCCAGGAAAGTAACCCTTTGGAGTCCCTCAGAATGACGCCTGGGGGGAGGGGGGAGCAGAAACATGCAATTTGGGGAGTCTCAATGTGATGCTTGAGGTGCCCAGGTACACTTGGAGGAGCCCCACGAATATCAAAGTCGTGGCGGAGCCTGGCCTAGGCCCAGGGCGTTGGCTGCTTCCTGGAGCCCACCAGCCCTCCTGTCCCCCAG
Seq C2 exon
CTCCCCACCAGGGCCCACCGCAGAAGCCCAGCCAGTCAGCTCCAGGGCCCACCGCGTCCGCGGGCTCGCCTCCCCGGCCTCGCCGGCGGCCCCCGCCCCAGCGCCCGCACCGCTGCCCCGACTGTGACAAGGCCTTCTCGTACCCGTCCAAGCTGGCCACGCACCGCTTAGCACACGGAGGCGCCCGACCCCACCCATGCCCAGACTGCCCCAAGGCCTTCTCCTACCCCTCCAAGCTGGCAGCCCACCGCCTCACGCACAGCGGCGCCCGCCCGCACCCGTGCCCACACTGCCCGAAGTCCTTTGGCCACCGCTCCAAGCTGGCGGCTCACCTCTGGACCCACGCACCCACCCGCCCCTACCCGTGCCCCGACTGCCCCAAGTCCTTCTGCTACCCTTCCAAGCTGGCGGCCCACCGCCACACGCACCACGCCACCGACGCCCGCCCCTATCCTTGCCCGCATTGCCCCAAGGCTTTCTCATTTCCCTCCAAGCTGGCCGCCCATCGCCTATGTCACGACCCCCCAACCGCGCCCGGCAGCCAGGCGACTGCCTGGCACCGATGCTCCAGCTGCGGCCAGGCCTTTGGCCAGAGACGCTTACTGCTCCTTCATCAACGCAGCCACCACCAGGTGGAGCACAAGGGGGAGAGAGACTGAGCCCTCCCTTGGCTCACTGTCCCCTTCTGCCGCCAGCCCTAGCCAGTAAGAGGTGGGATTTCTAAGACCGACTGTATGAGCTCGCCTCTTCCAGATAGCTGGCAGAGGGCAGGGCAAGGGATTGGCCATTTATACTGGGCTCGAGCTCAGAAGCCCGAGGAACTCTTTGCTCCCCTGCTTTGGGGAGATCTCAAACCATGGACGTGGAGCTGTGGTTTGACAGCGCTGGCTCTGCTTCTCCCCACACACTTACATGGCAAAGGTAAAAAGTCTGCTACTATCGTGGGTTGATGAGGATTGTGGGCAAACAGGCTCTCTTGTTAAAAGTTTAAACTGGTGTCTCCACTTTGGCCATATGACGGTATCTAAGAAATTGAAAATACATACATGCTTGTCTCAACTCTTCCACTTGTAGGAATTTATTCTATAAACTCATGAATGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176472-ZNF575:NM_174945:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=11.8),PF134651=zf-H2C2_2=WD(100=10.9),PF0009621=zf-C2H2=WD(100=9.5),PF0009621=zf-C2H2=WD(100=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAGTCCCACTGGCAAGG
R:
CAAAGGACTTCGGGCAGTGTG
Band lengths:
345-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)