MmuINT0179480 @ mm9
Intron Retention
Gene
ENSMUSG00000066721 | Zfp575
Description
zinc finger protein 575 [Source:MGI Symbol;Acc:MGI:2141921]
Coordinates
chr7:25368857-25371836:-
Coord C1 exon
chr7:25371673-25371836
Coord A exon
chr7:25371158-25371672
Coord C2 exon
chr7:25368857-25371157
Length
515 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCAGTTCTCCTGTCCCCCAGCCC
3' ss Score
7.2
Exon sequences
Seq C1 exon
GCCCGCACCCCTGTCTCCATGAACTTGTTAACCACTGGCGCCATCCTCGCCCCTTGCCCAGCTGCCCCTTGGTCCCTCTGCCAGCAAGATGCTGGGTGGAAGCGTGAAGTCCGAGGTCAGGGCCTCGGAACCTAGTCCCACCTGTCAGGACCCGGAGACCAAAG
Seq A exon
GTGAGAGCAGCCCAGGTTCTCATAGGGATCATTCCCCAGGAGTGACAGCCCAGGAGAACCAACGTAATGACCATTGGGGCCACCACCACCACTACCCTTAGCAGATTGTGGGGGATTATGGGTAGTGTTGGAAATGGACACTTTAGAAGCTTTCGGCACTGGCTTGGCAACTCTTTGAGGCGCTCATAGGACGTGGGGTCAGAGGGCAAGCAGAAATGTCCTCGAGTGGGACACCAGTGTGACACTTGCCTCCTCGGACACTTTGAGATACCCCTCTAGTATTAAGAGATGACAGGGCCCGACGTGGTGGCGCACACCTTTAGTTCCAGCGCTCAGGAGGTAGAGGCAGAGGGAATCCCTGTGAGTTTGGGGCCAATTGGTCTACAGAGAGTGTTCCAGGCCAGCCAAGGTTACATGGTGAGGCCCTGCTTTATACAGAGTGTTGGGAGGTGGAGCCTGGCCTGGACCCAGGGTGTGCCTGTTTCTAGAAGCCCACCAGTTCTCCTGTCCCCCAG
Seq C2 exon
CCCCACACCAGGACCTGCCGAGGCCCAACCAGCCCGCTGCCTCTGGGAGCGTGCCCTCCCGGCCCCGCCGGCGGCCCCCTCCCCAGCGCCCGCACCGCTGCCCGGATTGCCCCAAGGCCTTCTCGTACCCATCCAAGCTGGCCACGCACCGGCTAGCGCACGGCGGCACCCGCCCGCACCCGTGCCCCGACTGTCCCAAGGCCTTCTCCTACCCGTCCAAGCTGGCTGCGCACCGCCTCACGCACAGCGGAGCTCGCCCGCACTCCTGCCCGCACTGCCCCAAGGCCTTCGGCCACCGTTCCAAACTGGCGGCGCATCTCTGGACGCACGCACCCGCCCGTCCCTACCCGTGCCCCGATTGCCCCAAGTCCTTCTGCTACCCGTCCAAGTTGGCGGCCCACCGCCACACGCACCACGCCACCGACGCCCGCCCCTACCCTTGCCCGCACTGCCCCAAAGCGTTCTCGTTTCCTTCCAAACTGGCGGCCCATCGTCTGTGCCACGACCCCCCAACTGCGCCCAGCAGCCAGGCTACTGGCAGCCACCGATGCTCCAGCTGCAATCAGGCCTTTGGCCAGAGACGCCTCCTGCTGGTTCACCAACGCAGCCACCACCAGTCGGAGGGCCAGGGAGAGCGGGAGTGAACTCACCTGCCCACTCTGCCTCCATCACCTGTCAATAAAGACCTGGAATTTCTAAGCCCTGCTGTATGTGTGGACTTCCCTCTAACAGGGAGAATGGCAGGGTCTTGATACAGGTAGCCCAAGCTGGACTGGAACTTTTCTGGTAGCCTTCCAAAGCCTGGTGGTCTAGATATGTACCCAGGGTGGTTTGGGATTATTGGTTCTGCAGGAATCTGATTTAGAAGGTTGAGGGATTCTATCCCCATGCACAGAGGCAGGTGTCATCAGATTGGTGCTGGGCTCAAACCTTGGGCGGGCCTGGAGTTGTGCGGGTTGTGGTGACACTGGCCCTGAACACTCAAGCCTGTGATAAAGGCATCAGGGATGTTCACTGCGGTGTGGCCACACTGGGTACAGGCCATCACATGTCCACGGCCAGAGGCCAGTGAACAGAGGGGAATGTGTGGCCTTAGGAAAGAGGCCAGCATTGTGCGTACACGGAGCTGTGAGCACAGGAGGTGGCCACAGGAGGTGACAGAGGCAGAACCAAGGGCACATCTACTGGAGAGCTCAAGGCTGCAGTGCCTCTGAATCTCTTGGGGACCTGAGGCACACTGTCTGAAAGCACTTTGGGTTTGTGGGATGTTTGTTTTGTGATGAGGTCTCCCGTCTCCAGTCTACCCTGGGACTCTCAGGGTTCTGAGGTCTTTGTGACTGCTACACAAGCATTACACAGGCAAGCACACACGCTTTTGGATTTTTTTTCTTTCCTCCTTCTTCTATTTATGTGTACCTGAGTGTTTTCTCTGCATTATGTATATGCACATTTGTGCCTGGTGCCTGTAGGTGTGAGGGGCTCAGATCCCCTGGAATATTAGGAATAGTTGTGAGCCTCTGTGTGGGTCCTAGGACAAGAACCCAGTCCCTCTGCTAAGCAACAAGTGCTCTTAATCACAGAGCCATCTGTTAAGTCCCAATAAATACACCTTTTCCCCCCTTTGGCTGTCTGTTTATCTTTTCTTTTTTAAAAGAGAGGATTGCACTACGTAGCTTTGGAATTCACTGTGTAGACCAGGCTGCCTTCAATTTCACAGAGAACTGCTTGCTTCTGCCTCCCAAGAACAGGGAGTGTATGACAGGTCTACCCCCCCCACACACACACACACTAAACAAACATAATAAACAAAACCAAGCTGGGAGTGGTACCACACACCCATAGTTCCAGCACTCAGAGGGCAGAGGCAGAAAGACTGCAAAAGTTCAAGGCCAGTCTGGTCTGCATAGAAAGTTCCAGACCAGGCAGGGCTATCATGTGAGGCCCTATCTACAAATAAAATATACTATCAACACACATGCTAGGTTTATATGCAAGAACAAGTGTAAGATGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAGAATGCTCCTTAAGAGGGACGGGGTTTCGTTTTCTCTCGCTCTTGCTTCTTGCTCTCTTGCTTCTTGCACTCTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066721-Zfp575:NM_001033205:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.374
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=11.2),PF0009621=zf-C2H2=WD(100=9.8),PF0009621=zf-C2H2=WD(100=11.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTAACCACTGGCGCCATC
R:
TAGGAGAAGGCCTTGGGACAG
Band lengths:
351-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: