RnoINT0168408 @ rn6
Intron Retention
Gene
ENSRNOG00000024065 | Zfp575
Description
zinc finger protein 575 [Source:RGD Symbol;Acc:1305025]
Coordinates
chr1:81447987-81449360:-
Coord C1 exon
chr1:81449197-81449360
Coord A exon
chr1:81448689-81449196
Coord C2 exon
chr1:81447987-81448688
Length
508 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCAGTTCTCCTGTCCCCCAGTCT
3' ss Score
7.09
Exon sequences
Seq C1 exon
GTCTCCACCCCTGTCTCCATGAACGTGTTAACCTCTGGCGCCATCCTCGCCCCTTGCCCTGCTGCCCCTTGGTTCCTTTGCCAGCAAGATGCTGGGTGGAAGCGTGAAGTCCGAGGCCAGGGTCTCAGAACCTAATCCCACTTCTCAGGACCCGGAGACCAAAG
Seq A exon
GTGAGAGCAGCCCAGGTTCTCATAGGGATCATTCCCCAGGACGACCGCGGAGGAAAACCAACCTTATGATCATTTGGGGCCACCACAACCACCACTCTCAGCAGATTGTGGGGGGTTATGGGTAGTGCTGGAAATGGACACTTTAGAAGCTTTCGGGACTGGCTTGGCAACTCTGTGAGGCGCTCATAGAACGTGGGGTCAGAGGGCAAGCAGAAATGTCCCTTAATGGGACACCAGTGTGACATGTGCCTTCTCAGACACTTTGAGATACCCCTCTAGTATTAAGAGATGGCAGGGCCCGGTGTGGTGGCGCACGCCTTTAGTCCTAGCACTCAGGAGGTAGAGGCAGGGGCAATCTCTGTGAGTTTGGGGCCTACAGAGAATGTTCCAGGCCAGCCAAGGTTACATAGTGAGGCCCTGCTTTAGACAGTGTTGAAGGGAGGGGGAGCCTGACCTGTACACAAAGTGTGTCTGTTTCTAGAAGCCCACCAGTTCTCCTGTCCCCCAG
Seq C2 exon
TCTCCCACCAGGACCTGCCGAGGCCCAGCCAGCCCGCTGTATCTGGGAGTGTGCCCTCCGGGCCCCGCCGGAGGCCCCCTCCCCAGCGCCCACACCGCTGCCCAGACTGCCCGAAGGCCTTCTCGTACCCATCCAAGCTGGCCACACACCGGCTAGCGCACGGCGGCACCCGCCCACACCCGTGCCCCGATTGTCCCAAGGCCTTCTCATACCCCTCCAAGCTGGCTGCGCACCGCCTCACGCATAGCGGAGCTCGCCCACACTCCTGCCCACACTGCCCCAAGGCCTTCGGCCACCGCTCCAAGCTGGCGGCGCATCTCTGGACCCACGCGCCCGCCCGTCCCTACCCGTGCCCCGATTGCCCCAAGTCCTTCTGCTACCCGTCCAAATTGGCGGCCCACCGCCACACTCACCACGCCACCGACGCCCGCCCCTACCCTTGCCCGCACTGCCCCAAAGCGTTCTCGTTTCCCTCCAAACTGGCGGCCCACCGCCTGTGCCACGACCCCCCAACTGCGCCCAGCAGCCAGACCACTGGCCGCCACCGATGCTCCAGTTGCAACCAGGCCTTTGGCCAGAGACGCCTCCTGCTGGTTCACCAACGCAGCCACCACCAGCCGGAGAGCCAAGGAGAGAGGGAGTGAGCTCACTTGCCCTCTCTGCCTCCATCTCCTGCCAATAAAGACCTGGAATTTCTAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024065:ENSRNOT00000035356:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=11.2),PF0009621=zf-C2H2=WD(100=9.8),PF139121=zf-C2H2_6=WD(100=12.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTAACCTCTGGCGCCATC
R:
GGAGGGGTATGAGAAGGCCTT
Band lengths:
358-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]