HsaINT0187720 @ hg38
Intron Retention
Gene
ENSG00000176472 | ZNF575
Description
zinc finger protein 575 [Source:HGNC Symbol;Acc:HGNC:27606]
Coordinates
chr19:43534337-43536130:+
Coord C1 exon
chr19:43534337-43534501
Coord A exon
chr19:43534502-43535028
Coord C2 exon
chr19:43535029-43536130
Length
527 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCAGCCCTCCTGTCCCCCAGCTC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GCCCTCCAACCCTATCCCCATCAGCCTGGTCATCACCGGCGTCACCCCCGCCCCGCGCCCTGCCCCTAGGTTCCTGTGCCAGCAAGATGCTGGAGCGAGGCGCGGAGTCCGCGGCCGGGGCTACCGATCCTAGTCCCACTGGCAAGGAACCAGTGACCAAAGAAG
Seq A exon
GTGAGAGTGCCCCGCCTGTGAGTAGGGAGCATTCTCCAGGAACGGGGGCCAAAATAATCACATTCTGGGGGAATCTCAGGGTGAAAATTTGAGGGCCCTAGGGTGATGACTATTTGGGATCCCCAAAACTGCCACATTCTGGGAAATCCTCCCATTTGGCTCAGAGAGAGCCTCAGTGACCATTTGCTAAGGCTCAGGAAATGAGCCTTACAGAAGGGACGGGTCAGGGATGACATGCGGGATGTCAGGGTGATCACTGGGAAGATACTAGAAACGGATACCTTGGTAGCTTTGAGGAAGCCTTAGTAGCTTTGGGGATCCAGGAAAGTAACCCTTTGGAGTCCCTCAGAATGACGCCTGGGGGGAGGGGGGAGCAGAAACATGCAATTTGGGGAGTCTCAATGTGATGCTTGAGGTGCCCAGGTACACTTGGAGGAGCCCCACGAATATCAAAGTCGTGGCGGAGCCTGGCCTAGGCCCAGGGCGTTGGCTGCTTCCTGGAGCCCACCAGCCCTCCTGTCCCCCAG
Seq C2 exon
CTCCCCACCAGGGCCCACCGCAGAAGCCCAGCCAGTCAGCTCCAGGGCCCACCGCGTCCGCGGGCTCGCCTCCCCGGCCTCGCCGGCGGCCCCCGCCCCAGCGCCCGCACCGCTGCCCCGACTGTGACAAGGCCTTCTCGTACCCGTCCAAGCTGGCCACGCACCGCTTAGCACACGGAGGCGCCCGACCCCACCCATGCCCAGACTGCCCCAAGGCCTTCTCCTACCCCTCCAAGCTGGCAGCCCACCGCCTCACGCACAGCGGCGCCCGCCCGCACCCGTGCCCACACTGCCCGAAGTCCTTTGGCCACCGCTCCAAGCTGGCGGCTCACCTCTGGACCCACGCACCCACCCGCCCCTACCCGTGCCCCGACTGCCCCAAGTCCTTCTGCTACCCTTCCAAGCTGGCGGCCCACCGCCACACGCACCACGCCACCGACGCCCGCCCCTATCCTTGCCCGCATTGCCCCAAGGCTTTCTCATTTCCCTCCAAGCTGGCCGCCCATCGCCTATGTCACGACCCCCCAACCGCGCCCGGCAGCCAGGCGACTGCCTGGCACCGATGCTCCAGCTGCGGCCAGGCCTTTGGCCAGAGACGCTTACTGCTCCTTCATCAACGCAGCCACCACCAGGTGGAGCACAAGGGGGAGAGAGACTGAGCCCTCCCTTGGCTCACTGTCCCCTTCTGCCGCCAGCCCTAGCCAGTAAGAGGTGGGATTTCTAAGACCGACTGTATGAGCTCGCCTCTTCCAGATAGCTGGCAGAGGGCAGGGCAAGGGATTGGCCATTTATACTGGGCTCGAGCTCAGAAGCCCGAGGAACTCTTTGCTCCCCTGCTTTGGGGAGATCTCAAACCATGGACGTGGAGCTGTGGTTTGACAGCGCTGGCTCTGCTTCTCCCCACACACTTACATGGCAAAGGTAAAAAGTCTGCTACTATCGTGGGTTGATGAGGATTGTGGGCAAACAGGCTCTCTTGTTAAAAGTTTAAACTGGTGTCTCCACTTTGGCCATATGACGGTATCTAAGAAATTGAAAATACATACATGCTTGTCTCAACTCTTCCACTTGTAGGAATTTATTCTATAAACTCATGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176472:ENST00000458714:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=11.8),PF134651=zf-H2C2_2=WD(100=10.9),PF0009621=zf-C2H2=WD(100=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAGTCCCACTGGCAAGG
R:
CAAAGGACTTCGGGCAGTGTG
Band lengths:
345-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains