BtaINT0166029 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046481 | ZNF740
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MZB2]
Coordinates
chr5:26979339-26980475:-
Coord C1 exon
chr5:26980357-26980475
Coord A exon
chr5:26979429-26980356
Coord C2 exon
chr5:26979339-26979428
Length
928 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AACCCTCCGTTTCTTCTCAGTGT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAGAAGCCATTTGAGTGTGACATATGTGATATGCGTTTCATCCAGAAGTACCACCTGGAGCGTCACAAGCGTGTACACAGTGGGGAAAAGCCCTACCAGTGTGAACGGTGTCACCAG
Seq A exon
GTAAGCTCACGTGTCATGCATTCACACCCACACACAAACTTTCTTCCCCAATAGCCAGGGCTCGCCCCTACTCCCTGCTTAACAAGGGGCCATCTCGCATTCCTGGCCATGATGGTGTTAGTACATCGGGGTGAGGTATATCTTTCTGGCCTTATATAGGTATATCTTTCTCTGCCTGTACCAGGCACAGTGAGACCATGTGTGACGTTACCTTCACATTAACTCCATGAGGTAGCTGTGTGGCCTTCATTTTGCCCATGGGGAAATTGAGGTTTAGAGAGGTTGAGTTTCCCAAGGACACAGCAGATCAGGGATTAGAGACACATTGAATGGAACTTCAGGACAGGTGCACTTAGGAGGAAGAGAGAAAAATTCCTGCCCTGAGGGAGCGGTCAATATCTGATGTGTTGTGAGTATAAAATCCAGGACCAAAACGAGACACAAACAAGAGATGAGAAATGATAACAGTGAGCACTTTCTGGATGCCTTGCTGGGTCTCAAGCTTTGCTCCACGCTCTCAGGCTGTATCTGCAGAACACTAGTATGAAAGCTCTGTGGGGCAGAGACTTTGTCCCGCTGGTTCTCCACTCTCCTCAGCCCCAGGAACTGTACCTGCCTTGAGATACTGAATAAATACATGATAAATGAAGCAGCCGCTCTGTGAGTAGGTACCTTTAGCCCCATTTTACAGACGAGTGGACACATTCAGGGCTGAGATAGCTTGCCCAGGGTTGCGTGGCTACTGCGTGCTAGGCCAGGATTGAGACTTCAGCGTTGTGTTCCTAACCACTGTGCACTCATACTGTCTGTGTACATGCCAAGGGAATGTAGAATGGGACGTGCGCCTCTCCCATTTGGGAAGGACAGCTCGAGCCAATAGGTAACCAAGTTTCTTCTCTCAGGCACTTAACCCTCCGTTTCTTCTCAG
Seq C2 exon
TGTTTTTCTCGGACAGATCGATTACTCAGACACAAACGGATGTGCCAAGGGTGCCAGTCCAAGACTTCCGACGGGCAGTTTTCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046481:ENSBTAT00000065154:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PD(26.7=30.0),PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(11.5=10.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGCCATTTGAGTGTGACA
R:
TAGAGAGAAAACTGCCCGTCG
Band lengths:
207-1135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]