RnoINT0167797 @ rn6
Intron Retention
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70514949-70516931:-
Coord C1 exon
chr11:70516813-70516931
Coord A exon
chr11:70516548-70516812
Coord C2 exon
chr11:70514949-70516547
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCAACCTCTGACTTCAACAGTAT
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTGAAAAACCATTTCGCTGCGATGAGTGTGGAATGAGATTCATACAGAAATATCACATGGAAAGGCACAAAAGAACTCACAGTGGGGAGAAGCCTTACCAGTGTGAATACTGCTTACAG
Seq A exon
GTAAGTGAGGCAGTCTGGCTCTCCCGCCTTACCTACAGTGCGACATCACTGGCAAGTTAGGCACCAGTTAGTAGTAGAACCATTGAACATTTTAAGCTCCAATTAGATTTATAGTAGAAACTTGATCAGTGAGTTAGTTTGGAATTATTTATATTGTTATTAATTATTTTGTTTCTTTTCTTCTCTTCCTTGTTGACCAAAAAAACCAAACAAATAAACATACAAACAACAACAAAATACCACTTCCAACCTCTGACTTCAACAG
Seq C2 exon
TATTTTTCCAGAACAGATCGTGTATTGAAACATAAACGTATGTGCCATGAAAATCACGACAAAAAACTAAACAGATGTGCCATCAAAGGTGGCCTTCTGACATCAGAGGAAGATTCTGGCTTTTCTACGTCACCAAAAGATAATTCACTGCCAAAAAAGAAAAGGCAAAAACCTGAGAAGAAATCGTCCGGGATGGACAAGGAGAGTGTCCTGGACAAATCTGACACGAAGAAAGACAGAAACGATTACCTGCCCCTCTACTCGTCCAGCACTAAAGTGAAGGACGAGTACATGGTGGCGGAGTACGCTGTTGAAATGCCCCATTCCTCAGTGGGAGGGTCCCATTTAGAAGACGCTTCTGGAGAGATACACCCACCCAAGTTGGTTCTCAAAAAAATCAATAGTAAGAGAAGTCTGAAACAGCCCCTGGAGCAAAGTCAAACCATTTCACCCCTATCCACTTACGAAGACAGCAAAGTTTCCAAGTATGCATTTGAGCTTGTGGATAAGCAGGCATTACTAGACTCGGAAGGCAGTGCTGACATCGATCAAGTGGATAACTTGCAGGAGGGGCCCAGCAAACCCGTGCACAGCAGTACTAATTACGACGACGCCATGCAGTTCCTGAAGAAGAAGCGGTATCTCCAGGCTGCAAGTAACAACAGCAGGGAGTACGCACTGAATGTGGGCACCATAGCTTCTCAGCCTTCTGTGACACAAGCAGCCGTGGCCAGCGTCATTGATGAAAACACCACAGCATCCATACTAGATTCCCAGGCACTGAATGTGGAGATTAAGAGCAATCATGACAAAAATGTTATTCCAGATGAGGTCCTGCAGACTCTGCTGGATCATTATTCCCACAAAGCTAATGGACAGCATGAGATTTCCTTCAGCGTTGCAGATACCGAAGTGACTTCTAGCATATCAATCAATTCTTCCGATGTACCCGAGGTCACCCAGTCAGAGAATGTTGGATCAAGCTCCCAAGCATCCTCCTCAGATAAAGCTAACATGTTGCAGGAGTACTCCAAGTTTCTGCAGCAGGCTTTGGACAGAACTAGCCAAAACGATGCCTATTTGAACAGCCCGAGCCTTAACTTTGTGACTGACAACCAGACCCTTCCAAATCCGCCAGCATTCTCTTCCATAGACAAGCAAGTCTATGCGGCCATGCCCATCAATAGCTTTCGATCAGGAATGAATTCTCCACTAAGAACAACTCCAGATAAGTCCCACTTTGGACTAATAGTCGGTGACTCACAGCACCCATTTCCCTTTTCAGGTGACGAGACAAACCACGCCTCTGCCACGTCAACAGCAGACTTTTTGGATCAAGTAACTTCTCAGAAGAAAGCTGAGGCACAGCCTGTCCACCAGGCTTACCAAATGAGCTCCTTTGAACAGCCCTTCCGTGCTCCATACCATGGATCCAGAGCTGGAATAGCAACTCAATTTAGCACTGCCAATGGACAGGTGAACCTTCGGGGACCAGGGACAAGTGCTGAATTTTCAGAATTCCCCTTGGTGAATGTAAATGATAATAGAGCTGGGATGACATCTTCACCAGATGCCACAACTGGCCAGACTTTTGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789:ENSRNOT00000002435:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.618
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(11.5=0.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGGAGAAGCCTTACCAG
R:
GACGAGTAGAGGGGCAGGTAA
Band lengths:
305-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]