GgaINT0047348 @ galGal3
Intron Retention
Gene
ENSGALG00000012049 | ZNF148
Description
NA
Coordinates
chr7:29632305-29634339:-
Coord C1 exon
chr7:29634221-29634339
Coord A exon
chr7:29633898-29634220
Coord C2 exon
chr7:29632305-29633897
Length
323 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CAAAACTATGTATTCTGCAGTAT
3' ss Score
4.31
Exon sequences
Seq C1 exon
GTGAGAAGCCATTTCGTTGTGATGAATGTGGTATGAGGTTTATTCAGAAGTATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTACCAGTGCGAGTATTGTTTGCAG
Seq A exon
GTAAGATGATGTAGTGAAATCTTTCGCAGTTAAAAAAAATGAAGTACTTGCCAGTTTCCAAGTAGTACACGTGGGATTTTCTCCAGCTACTGTAGTCCTGAACATATATAAAATAGTGTTTTTTTTCAGTTACAGTGAGGTGTCTTGGTGCTTACGTGGAGCAGTCACAACTGTCCGAGGTTGACTACTGATATATGCAATGTTGTTTGACACTTCTTTAGAAGTTAGAAAAAAGGGATAGCCTACAAGTAAATTTGTTAGAATTAGTTTCTTGGCGATAATGCATTTATGTTTCTCTAATTACAAAACTATGTATTCTGCAG
Seq C2 exon
TATTTCTCCAGGACTGATCGTGTGCTGAAACATAAACGTATGTGCCATGAGAACCGTGACAAGAAACCGAACAGAAGTGCCACCAAAGTTGGCTTTTTGCCATCGGAGGAAGATTCTGGTTTCTCTACGCCTATGAAAGACAGCTCCTTGCCAAAGAAGAAAAGGCAGAAAACAGAGAAAACAAAATCTGGAGATAAGGACGGTACGGATAAATCAGAACAGAAGAAGGACAAAAATGACTATTTGCCTTTGTATTCTGCTAGCACGAAAGTAAAAGATGAATATATGGTAGCAGAATATGCTGTCGAGATGCCACATTCTTCTGTCAGTGGGTCGCACTTAGAAGAAGCAAATTCTGGGGAAATACACCCACCCAAGCTCGTTCTCAAGAAAGTTAACAGCAAGAGGAGTCTTAAACAGCCACTCGAGCAAAGTCAAAGCATTTCACCTTTATCTACGTATGAAGACAGCAAGGTTTCAAAGTATACCTTTGATCTTGTGGATAAACAAAGTTTACTGGACTCTGAAGGTAATGCTGACATTGATCAAGTTGACACGTTACAAGAAGGGCCCAGTAAACCTGTGCACAGCAGCACTAACTATGATGATGCAATGCAGTTTTTAAAGAAAAAGAGGTATCTACAAGCAGCTAGTAACAACAGTAGAGAATATGCCTTGAATGTAAGTACCATAGCATCTCAGCCTTCTGTAACACAGGCAGCTGTGGCAAGCGTCATTGACGAAACTGCTACAGCTTCAATATTAGACACACAGGCACTGAATGTTGAAATTAAAGGCAGCCATGACAAAAATGTCATTCCAGATGAGGTGCTGCAAACTCTGTTAGATCATTATTCACACAAGGCTAACGGACAACATGAGATCTCCTTCAGTGTGGCTGACACTGAGGTGACCTCCAGTATATCAATCAATTCTTCTGAAGTATCTGAGGTCACCCAATCTGAGACAGTTGGAACAAGCTCTCAAGCTTCCTCATCAGATAAAGCTAGTATGTTACAGGAATACTCAAAGTTTTTACAACAAGCTTTGGACAGAACTAGCCAAAATGATGCCTATTTGAACAACCCAAGCCTTAATTTTGTGACTGATAACCAGACTCTTACAACCCAGCCAGCATTTCCTTCCATAGAGAAGCAGGTCTACACGTCTATACCCGTCAACAGCTTTCGCTCGGGAATGAACTCTCCATTAAGAACAACTCCAGACAAGTCTCATTTTGGACTAATGGTTGGTGATTCGCAGCACCCTTTTCCATTTTCAGGTGACGAGGCAAATCATTCTTCCTCCTCCTCTACACAGGACTTCTTGGAACAAGTAACTTCTCAGAAGAAAGCAGAGGCACAGCCTGTTCATCAAGCATATCAAATTAGCTCCTTTGAGCAGCCCTTCAGAGCTCAGTACCATGGGGCAAGAGCTGGAATATCATCTCAATTTAGCACTGCCAATGGACAGGTGAACCTTCGGGGACCAGGGACAAGTGCTGACTTCCCAGAATTTCCCTTGGTGAATGTAAATGATAGCAGAGCTGGGATGACTTCTTCACCTGATGCCACAACAGGCCAGACTTTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049:ENSGALT00000019681:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.635
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(11.5=0.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGCCTTACCAGTGCGA
R:
GAATGTGGCATCTCGACAGCA
Band lengths:
354-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]