BtaINT0166148 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12653591-12656296:+
Coord C1 exon
chr17:12653591-12653830
Coord A exon
chr17:12653831-12656241
Coord C2 exon
chr17:12656242-12656296
Length
2411 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTCATTCTCTCTCTTTACAGAGA
3' ss Score
11.67
Exon sequences
Seq C1 exon
CGGAAAGCTACAAGGACACTCAGATGGTGAAGATTAAAGAGGAGCCTATGGAGGTTGACATCCAGGACTCGCAGGTCTCGATATCACCCAGCTGCAATGTTGGCTACAGCACTTTAATCGGGCGAGAGAAAACGGAACCCTTGCAGAAGCTGCCAGAAGGCAGAGTAGCCCCGGAGAGAAACCTCTTCAGTCAGGACATCTCCGTGAAGATGGCTTCCGAGCTGCTTTTTCAACTGTCAG
Seq A exon
GTACGTTTTCTTGCAGGAAAAAAAAAGTCAATAGTTGGGACTGATTTGAGGGAAAGCCACTCTAATAAAGTAAAAAAAACACCTGCATAGTAGGCTTTTTTAGACAGAAATCCATTTTGTTACTTTAACATGGATTCCGCCACTCAAATGAACAGTCCATCAGATGTTGCCAAGTCAAACTCCTGCCAAACTTTCTTTAATAAATAGTTAAGAATCATTTGAAATTAGAACTCTATTCAGTTCCATGCAAAAGATCCCTGCTGCATGGATGAAATATCTCACCTCTAGTTTTGTTTAGGCAGTTGATCTGATTAACAGCCTTTTTTTTTTTCCTAATGTGCAAAAGATTAACTTCAGTTTACTCTAACAGTGGCTGAATTACCGTGAATTCCAAAGTAGTGTGATCGGAATTAATGAGATTTTACTATATCTTGCCCCTGCAAAAAAAAGCCAAGGAAAGGGAAAAGTAAAAGATGAAACTGTAAGGACTCTTTCCCCAGCTATAACCTGGTAGAACATTTTCTGTAAACCAACCTTTTCTACTTTGACTACTTAGAATTCAAAGTCTAGAAGTCAGTTGCTAGCTCAGCTAAATGTCTTGATAGAATAGGTAAGGGTCCTAGAACCTAAGTTGTTCCCTTTATTACCTCTTTCAAGCAGCATCCTCTTCATTGTTATCAAATTTAATGTGCTGTTACTGTTTGAATGTGATTGAGATGAATGAAGGAGACTCATGTAAGATTCAGACTTATATAGAAACACAGATACTTTATCTTTGGTCAAGCATTGGCCTACATACTGAAATTCAGGCATCAGTAGCGTTTGTCACTGATGTTTCATGAACTCTGTTTTGCTATGACTTGCAGATTTAAAACACCCATTATTTAAATGCCACATTATTTAAGTGCTAACTTTTCTCCACTAAGAAAAACCCCAGAAAAAGGAAAGAAGCTAGGATCTGTATGCCATTCTGATAGCTCATTCTCTCGTTGGCCTTGTGACACTACCCATAGCCGTGAAGTTACTTGTTGGTGCTGAAGATGGTGGCTGTGGGTTCTCAAACAAGAACTGTGCTTGTGCAGAGCTCAAAGAGGTGGAAACAGTGAAGTCAGTGAACTGAATAGGCCATATAGTTCTTTGCAAGTTCCAAATATGCTCCAAACATGCAAGATGCTTTTCTTTAAAGAAGAAAAAAAGCAAAACAGGCTGAATGCATCTCTAAAAACAATGTAATTTTGTGAGTGATTTGGCCGTTCAGATTTGCAGAAGTGAGGCCAGTGAGGCTCTTTTCAAAAAGTCTCTGTCTCCAGCAGTACATTATCACGGTCTACTATCAGCTCAAAACTTTGTGTCTGAGAGTTCTCACCCTGGCGCTGTCACTGACCGCCCCGGTGACCTCAAGCAAGTCATTTAGCCCCGATTTCCTGCTCTCTCAAAGAACCCTGCCTGTGAATCCAGATTCACTCTCATTGTCACTGTTGAGTGGACAGAAAGGAGTCGTCCACACAAACATGTACACAGCAGCCTCAGACCAGTGTTTAAAAGCATGGGAAAGATAGCATTAATCTTTGTTTACATTTTTTCCCCGAATCCATGAGATTAGGGGTTTTTCGCTTGCCCTGCCGTTGAAATCTGAAACCCTTGTAGAGGTGGCCAGTTTTCCTCTGGAGACTTAAAAGAAGCCATTGAGAGCTGTGACAGTCAGAAGCCTCACATTTGAACTGGTTAGGGAAGACCAGAGGTCAACTTTTGTGCTCTTGAAAGCTAATTAAATAATTTCTGACAGCTGGTAGATACAGACCTCAAGACGGAGTAAGGGAGAGTTTACCTCCCCTCGTCTAATGATATTTTTTTGTCCCCTGTGACATTTATCAGAATAAGCGCTCAATGACTCTCACACCCAGAGGTCTTAACGACTGTTTTTATAGCCTGCCTCACAAAGGGGCCTGACAATACGGAATGCTTAAAGGTTGTCATCAAAGTCAGAAGCAGAACAGTTGCAACAACTGCAGTTTTCATGCTGAATCAGAGAAAAACAGACATTTTTCAGTTGGGGGAAAATATAATCGAAATAACTATCTTTGTGCACGTCTGTGTGTGTGTGGGTGTGTGTGTGTGGTCTGTACATGTACTTACTGAGGCCTGATGAAAATCAGACACATGCTTGTAGTTTGTTAATAACTCTTTCCCTTTGATTGGTTTTTAATCAACTATTTTGGTAGATGCTGTTGACATGCTTCTGTTGCCTGTCTTTATCAGTAAGACAGGAGGGGTTTGACTGCTTGAAAGAGAAACCAAAAGAAAACCACAAGAGAGAAAGAGGTGTGGAGGATGTTTCTGCTTCAGCCTTAAACACACAGATTAAGTCAGAGCAACCTAAGAGATGTCTGTTTCATTCTCTCTCTTTACAG
Seq C2 exon
AGAAGGTGAGCAAAGAGCACACTCAGAAAGAAAACACCATCCGGACGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738:ENSBTAT00000016933:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development