GgaINT0076309 @ galGal3
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32371045-32372037:-
Coord C1 exon
chr4:32371789-32372037
Coord A exon
chr4:32371103-32371788
Coord C2 exon
chr4:32371045-32371102
Length
686 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
AAATGTACATTCCTCCACAGAAA
3' ss Score
7.09
Exon sequences
Seq C1 exon
CTGAGAGTTACAAGGAAACCCAGACCGTAAAGATAAAAGAAGAACCAATGGAAGTTGACATTCATGATTCTCAGACTTCGGTGTCACCCAGCCAACCCAGCCAAAATGTTGGCTACAGCACTTTATTAGGGCGAGACATTAGTGAACACATCCAGAAGGCACCAGAAGGTCGTGTGCTCCCAGAACGAAATCTGTTCAGCCAGGATATATCAGTGAAGATGGCATCTGAGCTGCTCTTCCAGTTATCAG
Seq A exon
GTAAAAGCAGTGGAAATAGCTGAAAGCAGAATTTAAAGAGCAAAAGGAGATCATGTATAATCATTAAGGTGCTACGAAAGTATGAGATTGCTAAGGCTGAAGCGTAATAGGAGGTAGAGCCCTTCTACCCTTGCAAGTGAAATACAAAAGTCTTGCCAAATGTTCTCCATAGTTAACATATGTTTTAGAGCACTGTGACAGTCTGAGCAGGTTCATAATGTTTGAACTGAATTGGAAATGCCAGAGTTCAACTCTTGTATTTTTGAAGGCTCATTAAATGATTAGTGACAACTGGTTGATTGAGGCTTTGGAATATAGGAGAACACGTAGGTAGTTACTGTCATAAATGGACAGTGTCTGCAAGAGACAGTGCTCCTGAAGTTGTGCTGTCCATTGCTCTCCACATGGAAGGTGAACCTCAGCTATTACATGCATGCAACGATTTGAGCTCTGTTTGATGAAAGCTCGTAGAGCACTGACACTGAAATGTGAGGGGGAAAAAAATTGATGAGTTACATTTTTAAAAAAGCTGTGCTTATTCTGCAATCATATTGTAACCATTTCCCCTTAAATTATTCTGGATTATGCTGTTATCAGAAAGCATTAAAATAGTTCTGCTGAATAAAATTTGATAGGGAAAATATGATATATCCTATAATCACAAAAAAATGTACATTCCTCCACAG
Seq C2 exon
AAAAGGTGAGCAAAGAGCACAATCACAATAAAGATAACACCATCAGAACTACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000032243:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTACAAGGAAACCCAGACCG
R:
CTGACTGTAGTTCTGATGGTGT
Band lengths:
302-988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]