HsaINT0188493 @ hg19
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:27193]
Coordinates
chr4:146767108-146770713:-
Coord C1 exon
chr4:146770474-146770713
Coord A exon
chr4:146767166-146770473
Coord C2 exon
chr4:146767108-146767165
Length
3308 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTCATTCTTTCTCCTTACAGAAA
3' ss Score
11.66
Exon sequences
Seq C1 exon
CGGAAAGCTACAAGGAAACACAGATGGTGAAGATTAAAGAGGAACCCATGGAGGTTGACATCCAGGACTCCCATGTCTCGATATCACCCAGCCGGAATGTTGGCTACAGCACTTTAATCGGGCGAGAGAAAACCGAACCCTTACAGAAGATGCCAGAGGGCAGAGTACCCCCAGAGAGAAACCTCTTCAGTCAGGATATCTCTGTGAAAATGGCTTCCGAGCTCCTCTTTCAACTGTCAG
Seq A exon
GTATGTTTATGCACAGGAAAATGTCAATTATTGGAAATCATTGAAGGAAAACCCTTCTAACACAGTTTTTTTTAAAAAAAAAAACCTGAATTATAGGATTTTTTAGACAGAAATCAATTTTGTTGCTTTAACATGCATACTGCCACCCAAACTAACAGTTAATAAAGTGTTGCCAAGTAGAATTCCTGCCAAACTTTCCTTAATAAATAGTTAAGAATCACTTGAAATTAAAACTCTATTCAATTCTGCGCAAATGATTCCTGTTGACTGGGCTAAACACCTCACCTCTAATTTTGCTTAGGCAGTTGATCTGATTAACAGGCTTTTTTTTAATGTGCAAAAGATAAATTTCAATTTATTCCAACAGTGACTGAATTACTATGACTTCCAAATTAGTGTGGTCTGAATTAATGAGGTTTTATTGTATCTTGCCAAAACAAAAACAAAACAAAGAAGGGAAAAGCAAAAGATGAAGGTATGAGGACTATTTCCAGCTATAGCCTTAGCAGAACAGTTTCGGTAAACCAACTTTTTGTACTGCACATACTTACAATTGAAAAGTGCAGTAATTACCAGCTCAGTGAGGTGTCTGGATGAAATAGTTAAGGATCCCAGTACCTAAGTTGTTCCTTCTGTCATCTCTTTCAAGCCGCATAGCATTTGTCCCTAGCAAATTTAATATGCTTCTATTTTTTTGCACATGATTGAGGTTGATGGTATATACATATATAAGATTCGGATAGAAATACATACAAATACCTTGTCCAAAGTCAAGCACTGGCCTACAATATTAAAGTTTATCCATCAATAAAGCCTGTTACTAATGTTCAACAAACTCTGTTTTGTTATGGATAACACATTTAGAGCATCCATTTAATTCTCTCTTAAGGAAGATACCAGGAAAGAGAAAAAAAGCTAAAATCTGTCTGTCGCCATAATAGTTCACCTTCTCATTGACCTGGCAACACAGCCCATAGCTGTGTAATTATCAGATGGTGCTGAAAATGGTGGCCTCCAGGTCCTCAAACAGGGATGGTATTTGTGCAGATCTCTGCAGTAGCCGAAATCACTAATTCTGTAAACTTAATAGGACACACAGATCTTTGCAAGCTCCAAAACAGGCTACTTTTATTTATGTATTTTTTGAAGGATGAAGCTTATCTAAAAACAATATAACTTTAATAATGATTGAGGAGTTAAAATTTGCAAAAGTGTGACCTGCGTGGTTCTTTTCAGAAAGTCTCTCTAAACCGTATGCTGTCGCAGTCTCCTATCAGCTAAAAAGTTTGGGTCTGAGAGTTCTCACCCTGGCGCTGTCACTGCCTGGGTGACCTCAGACAAGTCATTTAGCCCCGATTTCCTGCTCTCTGAAAGAGTACTGGCTGTGAATCCAAATTCACGCTCATTGTCATTGTTGAGTGGACAGAAAGGAATTGTCCATGCACACATGCATGCAGTGGCTTCAGACTAGCAGTACAAAGTGTGAGACGGGTGTTGCAAATCTTTGTTTAAATTTTTCCAAAAATCCACAAGATTAAGAGATTTTTATTTGCCCTGCTGTTTAAATCTGAAACTCTTATACAGTTGGCCAGGTTTTTTCTAGATATTAAAAGAAGCCATTGACAGCTGTGACCGTCAGTGTAGGGTCCTCACATTTGAACTGCATTGGGAAGGCCAGAGTTCAACTTTTGTGTTCTTGAAAGCTCATTAAATAATTTCTGACAGCTGATAGATGTAGACCTCAAGCCACAGTAAGGGAGGGTCTACCTCTTCTTGTCTAAATGATATTTTTTTGTCCCTTATGACATTTATCAGAATAAGCACTGAATGACTGCAGCACGAAGAGGTCTTAGGCTGTTTTTATATCCCCTCTCACAAAGGGGCCTCACAATACAGAATGCTTAAAGGTTGTCATCAAAGTCAGAGGCGGAACAGTTGCAACAACTGCAGTTTTCATGCTGAATCAGAGGAAAGCAGAAATTTTCAGCTGGGGAAAGATACAGTGGAAATAACTGTCTCTGCCCATAACTCTATGTGTGTGTGCATGTGTATGTGTACGTATATATTTACCAAGGCCTCGTTCAAATCAGACCACATACTTGATATTTGATATTTGTTACTGTTTCCCTTTGATTGGTTTTACTTTTCTTTTTTTTTTTTATTTTTTTGAGACAGAGTTACACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCACTACACCCTCCACCTCCTAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACGCGCCATCACGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGCACCTGGCCTGAGTGATGGTTGTTTTTTGTTGTTGTTGTTGTGTTTTTGTTTGTTTGTTTGTTTGAGACAGAGTCTTGCTCTGTTGCTCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCGCTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACGCGCCATCATGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGCACCTGGCCTGAGTGATGGTTGTTTTTTGTTGTTGTTGTTGTGTTTTTTTGTTTGTTTGTTTGTTTGAGACAGAGTCTTGCTCTGTTGCTCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCGCTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACCATAGATGCCCACCACCATCCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGTGTTTCACTGTGTTAGCCAGGATAGTGTCGATCTCCTGACCTCCTAATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGGATACTATCAACATGCTTTGGATGATTGTCTTTTCCAGTAAGATGGGGAGGATCTGGATGTTTAAAAAAGAAATCAAAAGAAAACCACAAAGGAAAAAGAGAGATGTTGAGGGTTTTTCTGCTTAAGGCTAAAAGATGCAAGTTGAGTGAGAACAACCTAAGAGGTGTATGTTTCATTCTTTCTCCTTACAG
Seq C2 exon
AAAAAGTGAGCAAAGAGCACAATCATACAAAAGAAAACACCATCCGGACCACGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-ZNF827:NM_178835:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)