DreINT0181680 @ danRer10
Intron Retention
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35321452-35325337:-
Coord C1 exon
chr1:35325098-35325337
Coord A exon
chr1:35321507-35325097
Coord C2 exon
chr1:35321452-35321506
Length
3591 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TGTTTTTTTTTCTCTTTCAGAAA
3' ss Score
13.16
Exon sequences
Seq C1 exon
AGAACAACAAAGACGCTTGCGTCCAGAATGTTATTGTGAAGGCGGAGCCTATGGAAGTGGATCCACCCCTTGATCTGGCCTCACCCTCCTCCCATCTACTGGGCTTTAGCACTTCAGGACCATGTGAAAAGAAGGAACCAATGGTCAACCTCCCAGATCATTTGCCCCGCCCCCAGAATGACCTCTTCTCGCAGGACATATCGGTCAAAATGGCCTCCGAGCTGCTTTTCAAACTCTCTG
Seq A exon
GTAAGCAATAAGAAACAGCAGATTATTTGTTTGAAAGAAAAATATCTCTCTGTGAAGAGAGTCTTTAGGTTGTCATGTTTTCTGAGCGCTGCACTGACACACTAGAGAGTGGAGGGATATTTGTGGTGTTAAATGATGGCAGGATTGAGCTTTTCTTCCAAGAGCATTCTGAGGATTAGCAGAGACAAACCTGCCCCCAGCACTCCTCGCTGCCAACCACGGCTCTCTTTAAATGCCATCTAGCACCTCGGAAGCTGATCATAAAAAACCTGCACCCCCACATAATTTGTTGTATGTTTGTGTATGTGTGTATATATATATATATATATATAAACTATTTATATATATGTGTGTGTGTGTGTGTGTGTGTTTACATGTATACTACATACATACATACACACACATACCCAAACCACACACAACCCATTCACACCTTTTCACCTTCCCCCACCCAATGGAAGTGATGTGTAGCTGCACAGTGTATATGTATAACCCCTCAACCCTCGACTCCCTCAGATTGTTCTCAAACATTCTGGCTCAAGCACACTCGGTTGCACACACTTCCCTTGTCTCTCTCTCTCTCATTCTCTCTCTCTCCCTCTTGCTCCTGTGCAGCATCGTCATGGCAACGCAGAGAGCCCTTCCATCCTCTGTGAGCCGTGTGACCGAGAGGGTGTCAGGGAGAGGGGGCTTAGGAAGTGCCACCCAGGGAGCAAGGTTATTACCAGACCACCAGAAGAGAGAAAGACAGGCAGATAGACAGAAAGACTTGATACACTTTTCTCTTTGACCTCCGTTTCCTAATATTTTTAAATGCAACTTGGCAAAACATGATTTAAAAAATAGAAGCCCTGCAATCCCTGCTGAAATATGCATGCATGGCAAATTTATTTCTTATTCAGTATTTTTGTCCTGTTTTCCATTCTCGAAGAATATAACCTGTATTTACTGGATTCTGATATTGATTGAATTGTATTTTTATTACATATTACATATTTTAAGCATAAACCCTTCAATATTTCCTTGGACTGGTTTATCTGGTTTAGCAATTCATTAGCAGTTCATTTTATGACTAAAGAATACATTTAGTTTTTTCAATTATTGGAGTATAAATGGGCTGAACCTGACTCTCGGGAATGGATTGTCAATTTTACTTTTGTTTTGTTCTGTTACACTCATAAAAACAGGATTTTTAACCCAAATTTAGGCTAAATATTGACAAGTGCGAGAAAGAAAAGCCTTAATTTGAATAACACAATAATATGATTAAGGTGTTCACATGAGTTGCTTTTTAAATGATCTGTTCATGATCCCGTTTTACATGTTATAGCATATAATTTGATTAACATCATTGCGTCACCAAGCTATCCACATTTCCTTCGGAGTTTCATGTAGTTTCGGGTGTTTAGTTTTTAATTTGTTGACTTTAACTGCAGTTCAGCACTTTCAATTTTAATTCAGGAACATTTCATGAATGCCACCGTGACAAACGAGATATAAGATGCAAACTTATATCAACTGCTGGAAGATTTTTAACTGCACGCAGAATTTTATACTGCACGCTGTATGGACAAAAAATGTAAATAAACTCAATGTTCTCTTTGCCCTTTGTTTTTCAGTATTTTAAAATGCATTTTGGTTAAAAAGAAAATCTGAAAACAGATCTTAAATATGCATGTTGTAATGTGAAGTGGGACACTGAAAAAGGGGTGCGGATCCAAACACAGGTTTATTTAGCACAGAGGTTAGGAACCTTTTTTCAGCAAAGAGCCATTTCTGAATTTCTTTGGCAAATGCATTTTTTAAAGAGCCATTGGGGATATACAAGCATCACATGTCAAGCAAGTCCATGTTTTAAAAAAGGATAATTTATAGATTTTTTTTTTTCTATTCGCCATCAACACCAAGGTGATCATAGAAATGGAAGTTGCATAATCTTTTTTGGTGTCAGATTTAAGTTTATCCACAGCGCTGCACATGTGCATTGAAATGCCCTTTTATTTTTATTCTTATTCATTTTGCAGTAAAATATACAATAAAAAAGTCATTTTAATTGTATTTTCAACAGGAAATTATAATTATTATAATAGAATTTTTTTTTTATTATTGAAGGGAGACAGCTGGCCATAGAGCCACATATTTTTGGTCAAAGAGCCACATGTGGCTCCAGAGCCACAGATTCCCTACCCCTGATTTAGAAGAATGGTCAGGCAAGCAATGGTCAACACAGGGGCAAACAGATAACCTCAGGAAATCCAGAGTCGTAGTCAAATACACAGGCAAATGGTCAAAAGGCAGGCAGCAGTCAATGTGAATAAACAAAACAAAAAAAAGCAAAGATTTTCCGCATCTGGTGTGAAAGCAGCATAGTAGGATATATGTGGAGCTAGTGTTTCTTCCCATAAACTTACGGTGAATGGTTAATGTGACTTTTTTCCATTTTATACGGTTCCTTTTATAGCATTGATGTTGTAATGTAATAAAAATACAACCAGTTAAATAGACTTTGGCATTCATTTAGTTGCTCAAGCGTAAAACAAGACAAAATCCATTTACTCGCACTCAATCGTCAGAATCGGCAGGCTAGCGCTGAATCTCCATTGAATATACTAGGGTAAAATAAATGTTAATATTTTAAAGACATGGCAAGAAAAATTTAATTTAATTCAGTGCTTCTTGTACTTTATACCGGATTACACTCAGCCAGTGTAGAATGCTGATTTTTAAAGAAAACAAACCTTAAGCCCGTCTATTTTGGCATACAGTTCACCAGAAGCGCTTCACCCAGGTTACTGACAAATTAAAAGTCCTTTAGCATACTTCGACATATACCCTATTAATAGAGACTTGGAGCAGGTGTGTGTGTTGCATGACTGAAACATGTAGTCTATATATTAGCAGATTTGTTGTCCATTAGCTATCTACACAGGCTGAATTGCTGGTGATCATGACACATGTATTGCTGTTGTTATATTAATCAATATGTTCCAATTTACGCAAAAATGATCTATTATTGTATTGTCTATATATTAATTATCTATTATTCTTATAGAATATGTGCTGAATTTCTTAACATCTTATTTATATTGTATTTTAAAGCATAAACCCCACAAATGGTTTCTTAGTTTATGCTTAAAACATGAAAAATGAAACGATAGGAAATGCACCCTATATTCTCTTAGTAGTTGAATACGGTTTCAAATAAATTAATCTTGTTTTTACTGGAACAACTGATCTGAAGTTCAAGTTCTGAACTTATTATTTATTTAACACCTAAATAATAGTTAAGAACTAAATAATATAATAGTTTTAAAATATGTATAGGGGAAAAACTATTGGATAAAGTGATATTGGATGGTATACCAGCAAATTAGTATTATTTGTTGAAGACAAGCACTCAAAAATCATATGTAGATTCAGCAACAGTTATTTAGTTTTTCTCATCAGGCATGGATTGATGGTGACTGTTACTTGTGATTAACAGAATTGTGTCTGTTAAGAGAAAAACATTACTACTAACATATGATTTTTTTCAGTTTTGTAAAAACGAGTCCATATTTAACTCAAATTATGTTTTTTTTTCTCTTTCAG
Seq C2 exon
AAAAAGTAAGTAAAGCTAATGAAAACAAAGACAATGCATCATTCGGTATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171:ENSDART00000037516:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=NA C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]