MmuINT0179955 @ mm9
Intron Retention
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81642074-81644439:+
Coord C1 exon
chr8:81642074-81642313
Coord A exon
chr8:81642314-81644381
Coord C2 exon
chr8:81644382-81644439
Length
2068 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTCATTCTGTCTCCCTGCAGAAA
3' ss Score
13.25
Exon sequences
Seq C1 exon
CGGAAAGCTACAAGGAGACGCAGGCGGTGACGGTTAAAGAAGAACCCATGGAGGTGGACATCCAGGACTCCCCAGCCTCCATATCACCCAGCCGGAACATTGGCTACAGCACTTTAATGGGGCGAGAGAAAACTGAACCCTTACAGAAGCTGCCAGAAGGTCGAGTTCCCCCAGAGAGAAATCTCTTCAGCCAGGACATCTCTGTGAAGATGGCTTCTGAGCTGCTTTTTCAGCTCTCGG
Seq A exon
GTAGGTGAATTGTGGGAAAATGTTGCTGACTGGAAAGCATTGGTAGGAAAGTCTTTCTTAGGAGGGAAAAGTAGCCCGCGTGGTAAGTGTTTAGGAGGGATCTGCTCTTACATACCACATTAGTGGTTAATGAAATGTTGCCAAATCGGATTACTACCACACTTAAAAAAACTGAGTTGTTCCGATTTTATTTACATGGAGGCGAGAGGTTCCTGGGAACTGGTCTTCCTTCCACCACGTGGATTCCAGAGATAGAGCGCTGATTATCAGCCCCGTTACTCATGAGCCGTTTCACCGCGGCATGCTGGCTTTCACGCCGTTGAGAATTGGAACTCTGCGCAGTTCTCTGCTGATCCCTTTGATGAAGCTCAAACGCGCAGGTCTAGTGCTGATCTTATGAACAGCCTTTTCTTTGTCATGTGCAAAAGATAAATGTCCGTGTCCTCCAAGAAAATCATAATGTCTAGATTAGTGAAATTTTATTTTATCTTGCTGAAAAGAAATTTAAATAGAAAAGCAAAACGTGGGGCCCTGAAGGCTGTCCCCAGTTGTGGTCTCAGAGGATGTTTGTGTAGATCAACCTTTCTTCCTTCAAATGCCTAGAATCCAGTTGTACAGGTATTCGGTCCTGTGAAGGCTCTGAGTCCCAGAGTTGTGCCTCTGTCTGCTCTTCCGAGCCTCATGCCGTTTGTCCCTAGCAAGTGTAATGTGCTGTTGTTCCTTGAACACGCATGAGGCTGACGTTTTTCTGTACTGACAAGACTGGCATCTTGGTAGGCACACATAGCTCCCTCTCTGGGGCTTCATGCATTCACCCATCAGTCATTTCTTACTAACGTTTGATGAAGCAGACACACCCATCAGACAGAGGTTCCTGTTATTTAAGCCACTTGCCCCCTGTCTCAGAAATGGACCAGGAAAGAAGCTTAAGTCCATGGACCACGCTGGTAGGTCACTTTCTCCTCAGCTGTGTGGCTCTGATGACATGGAGCTCCTCCACAGCGGCAGAAATCCCTAGTCCAGTAAGCTTTAGGAGTCTTGACACGTGACCTTTTTTTCCCCCCCAAAGGTCGAGGCACATCCCAAAGCAAGGCTATGTAGGTAGTGACTTAGGAGCTCAGTGTAGCGTGAGCTAGGCCTCTGTGACCCTGAGCGCGCTCACCTGGACAACCCCAGATTGCATGCTGTCTACAGGGATGCTGGCAGGCAGGAAGATTCTCCTCGGATGTCAGAAAAGGGGGCATCCGTGAAAACACGTGATGTAGCTTCAGAGCAGTCAAAAGCAGGAAAGATTTCTAAACCTTGCTTATGTTTGTTTGTTTGTTTGTTTTTGTTGTTGTTGTTGCAAAAAGTCCCCAAGGTTAGTTTTTTGTTTTTTGTTTGTTTTTTTTTTAATTTATTTACCTGGTTGTAGAATCTGAAACCTTTGATAGGATCGGGCAGGTTTTCTGTAAATGCTTCAAAGAAGCCATTGAAAGCTGTGATGGCTGGGTAGAGTCTTCACATTTGTACTGGGTCAGCAAGGCTATGGTTCAACTTGGTGTTCTTGAAAGCTAATTAAATAATTTCCGACAGCTGGTGAATTCAGAGCCCAGGATGCATGAGGAGAGGGCTTACCTCTTGTCCAATGACATCGTTCTATTCCTAGTGACATTTATTAGACTAAGCAGTCCATGACAGCACCAAGAGCTCCCGAGTCATTCTCTGAAGGGTCCTAACAACATAGACTGCCATCAGAGCTACGGCAGGACAGTTACCACAACTGCCGTCTGAGGGCTTAGTTGAGGAAAATAGAAATTATCAACGAGGAAAGATGGACAGAAACAGCTATTCGTGTGCAGCTGTCTGTATGTGTACATGGTGGATGTCTGGTGTGTACTCGTACTACACACGTCTACTTGCAAGCAGACAACACTTAACACTTTGAGTAGGGTCCAACAGTTCCATGGATGTTATCTGGACGATTTTCACTTTCCCAATAAGACAGAGGAATTGCATGTTTCTGCCTAAAAGATGGACATGGACTGAGCTTAGCCCAAGTCACCTGTTTCATTCTGTCTCCCTGCAG
Seq C2 exon
AAAAAGTGAGCAAAGAACACAATCACACGAAAGAAAACGCAATGCGGACAACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-Zfp827:NM_178267:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: