HsaINT0188493 @ hg38
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145845956-145849561:-
Coord C1 exon
chr4:145849322-145849561
Coord A exon
chr4:145846014-145849321
Coord C2 exon
chr4:145845956-145846013
Length
3308 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTCATTCTTTCTCCTTACAGAAA
3' ss Score
11.66
Exon sequences
Seq C1 exon
CGGAAAGCTACAAGGAAACACAGATGGTGAAGATTAAAGAGGAACCCATGGAGGTTGACATCCAGGACTCCCATGTCTCGATATCACCCAGCCGGAATGTTGGCTACAGCACTTTAATCGGGCGAGAGAAAACCGAACCCTTACAGAAGATGCCAGAGGGCAGAGTACCCCCAGAGAGAAACCTCTTCAGTCAGGATATCTCTGTGAAAATGGCTTCCGAGCTCCTCTTTCAACTGTCAG
Seq A exon
GTATGTTTATGCACAGGAAAATGTCAATTATTGGAAATCATTGAAGGAAAACCCTTCTAACACAGTTTTTTTTAAAAAAAAAAACCTGAATTATAGGATTTTTTAGACAGAAATCAATTTTGTTGCTTTAACATGCATACTGCCACCCAAACTAACAGTTAATAAAGTGTTGCCAAGTAGAATTCCTGCCAAACTTTCCTTAATAAATAGTTAAGAATCACTTGAAATTAAAACTCTATTCAATTCTGCGCAAATGATTCCTGTTGACTGGGCTAAACACCTCACCTCTAATTTTGCTTAGGCAGTTGATCTGATTAACAGGCTTTTTTTTAATGTGCAAAAGATAAATTTCAATTTATTCCAACAGTGACTGAATTACTATGACTTCCAAATTAGTGTGGTCTGAATTAATGAGGTTTTATTGTATCTTGCCAAAACAAAAACAAAACAAAGAAGGGAAAAGCAAAAGATGAAGGTATGAGGACTATTTCCAGCTATAGCCTTAGCAGAACAGTTTCGGTAAACCAACTTTTTGTACTGCACATACTTACAATTGAAAAGTGCAGTAATTACCAGCTCAGTGAGGTGTCTGGATGAAATAGTTAAGGATCCCAGTACCTAAGTTGTTCCTTCTGTCATCTCTTTCAAGCCGCATAGCATTTGTCCCTAGCAAATTTAATATGCTTCTATTTTTTTGCACATGATTGAGGTTGATGGTATATACATATATAAGATTCGGATAGAAATACATACAAATACCTTGTCCAAAGTCAAGCACTGGCCTACAATATTAAAGTTTATCCATCAATAAAGCCTGTTACTAATGTTCAACAAACTCTGTTTTGTTATGGATAACACATTTAGAGCATCCATTTAATTCTCTCTTAAGGAAGATACCAGGAAAGAGAAAAAAAGCTAAAATCTGTCTGTCGCCATAATAGTTCACCTTCTCATTGACCTGGCAACACAGCCCATAGCTGTGTAATTATCAGATGGTGCTGAAAATGGTGGCCTCCAGGTCCTCAAACAGGGATGGTATTTGTGCAGATCTCTGCAGTAGCCGAAATCACTAATTCTGTAAACTTAATAGGACACACAGATCTTTGCAAGCTCCAAAACAGGCTACTTTTATTTATGTATTTTTTGAAGGATGAAGCTTATCTAAAAACAATATAACTTTAATAATGATTGAGGAGTTAAAATTTGCAAAAGTGTGACCTGCGTGGTTCTTTTCAGAAAGTCTCTCTAAACCGTATGCTGTCGCAGTCTCCTATCAGCTAAAAAGTTTGGGTCTGAGAGTTCTCACCCTGGCGCTGTCACTGCCTGGGTGACCTCAGACAAGTCATTTAGCCCCGATTTCCTGCTCTCTGAAAGAGTACTGGCTGTGAATCCAAATTCACGCTCATTGTCATTGTTGAGTGGACAGAAAGGAATTGTCCATGCACACATGCATGCAGTGGCTTCAGACTAGCAGTACAAAGTGTGAGACGGGTGTTGCAAATCTTTGTTTAAATTTTTCCAAAAATCCACAAGATTAAGAGATTTTTATTTGCCCTGCTGTTTAAATCTGAAACTCTTATACAGTTGGCCAGGTTTTTTCTAGATATTAAAAGAAGCCATTGACAGCTGTGACCGTCAGTGTAGGGTCCTCACATTTGAACTGCATTGGGAAGGCCAGAGTTCAACTTTTGTGTTCTTGAAAGCTCATTAAATAATTTCTGACAGCTGATAGATGTAGACCTCAAGCCACAGTAAGGGAGGGTCTACCTCTTCTTGTCTAAATGATATTTTTTTGTCCCTTATGACATTTATCAGAATAAGCACTGAATGACTGCAGCACGAAGAGGTCTTAGGCTGTTTTTATATCCCCTCTCACAAAGGGGCCTCACAATACAGAATGCTTAAAGGTTGTCATCAAAGTCAGAGGCGGAACAGTTGCAACAACTGCAGTTTTCATGCTGAATCAGAGGAAAGCAGAAATTTTCAGCTGGGGAAAGATACAGTGGAAATAACTGTCTCTGCCCATAACTCTATGTGTGTGTGCATGTGTATGTGTACGTATATATTTACCAAGGCCTCGTTCAAATCAGACCACATACTTGATATTTGATATTTGTTACTGTTTCCCTTTGATTGGTTTTACTTTTCTTTTTTTTTTTTATTTTTTTGAGACAGAGTTACACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCACTACACCCTCCACCTCCTAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACGCGCCATCACGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGCACCTGGCCTGAGTGATGGTTGTTTTTTGTTGTTGTTGTTGTGTTTTTGTTTGTTTGTTTGTTTGAGACAGAGTCTTGCTCTGTTGCTCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCGCTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACGCGCCATCATGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGCACCTGGCCTGAGTGATGGTTGTTTTTTGTTGTTGTTGTTGTGTTTTTTTGTTTGTTTGTTTGTTTGAGACAGAGTCTTGCTCTGTTGCTCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCGCTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACCATAGATGCCCACCACCATCCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGTGTTTCACTGTGTTAGCCAGGATAGTGTCGATCTCCTGACCTCCTAATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGGATACTATCAACATGCTTTGGATGATTGTCTTTTCCAGTAAGATGGGGAGGATCTGGATGTTTAAAAAAGAAATCAAAAGAAAACCACAAAGGAAAAAGAGAGATGTTGAGGGTTTTTCTGCTTAAGGCTAAAAGATGCAAGTTGAGTGAGAACAACCTAAGAGGTGTATGTTTCATTCTTTCTCCTTACAG
Seq C2 exon
AAAAAGTGAGCAAAGAGCACAATCATACAAAAGAAAACACCATCCGGACCACGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612:ENST00000508784:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.856
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains