RnoINT0168687 @ rn6
Intron Retention
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32470120-32472456:-
Coord C1 exon
chr19:32472217-32472456
Coord A exon
chr19:32470178-32472216
Coord C2 exon
chr19:32470120-32470177
Length
2039 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ATCATTCTGTCTTCTTTCAGAAA
3' ss Score
11.55
Exon sequences
Seq C1 exon
CGGAAAGTTACAAGGAGACGCAGGTCGTGACGGTTAAAGAAGAGCCCATGGAGGTGGATATCCAGGACTCCCCAGCCTCCATATCACCCAGCCGGAACGTTGGCTACAGCACTTTAATGGGGCGAGAAAAAACCGAACCCTTACAGAAGCTTCCGGAAGGTCGAGTTCCCCCAGAGAGAAATCTCTTCAGCCAGGACATCTCTGTGAAGATGGCTTCTGAGCTTCTTTTTCAACTCTCAG
Seq A exon
GTAGGTGAATTGTGGGAAATGTGGCTGACTGGAAAGCATTGGTAGTAAAGCCCTTCTTAGGAAGGGAAAGGTAACCCACGTGGTAGGTGTTTAGGAAGAGTTTGTTTTACATACCACATTAGTGGTTAATGAAGTGTTGCCAAGTCGGATTCCTACCACACTTAAAAAAACTTGTTAGGATTTTATGTGGAGGGTAGAGGTTCCTGGGAATTGTTTCTTTTATTCCACTACGTGGATTGCAGAGCTAGAACTCTGATTATCAGGCTTGACAGCAAGCCCCTTTACCCACTGAGCCCGCCCACCCGCGCGCGGTAAGCTGGTTTTAACACAGTTGAGAACTAGAACTCTACAGTTCTCTGCTGGTCCCTTTGACACGTACTCCTGGGAAGGTTTCGTGCTGATAGTATTAACAGCCTTTTCTTTGTAATGTGGGAAAGATAAATGTCCATGCCCTCCAAGAAAAATGGTATTGTCTGAATTAGTGAAATTTTATTATATCTCGCTGAAAAGAAATATAAATAGAAAAGTGAAAAGCGGGCCCTGAAAGCTGTCTCCAGTTGTTGTGGTCTAAGGGTGCTAGTGTAGATCAGTCTTTTCTTCCTTCAAATGCTCAGAATCCAGATGTGCAGGTACTCAGCGCTCTGAAGGGTCCCGGTACCGGAGTTGTGCCTCTGTCTGCTCTTCCAAGCCTCACACCTCTGTTCCTAGCAAATTTAATGTACTGTCATTCCTTGAGTGAGGCTGATGCTGTTTTGTACTCACAAGACTGTATTTTGGTGAGCACGCATACCCCTTCTCGGGGGCTTCATTACTAACATTTGATAAAGCACATCCGTCAGCCAAGAAGTCCCTGTTATTTAAGGCACTTGTCCCCTACCCCTCAGAAATGGACCAGGAAAGAAGCTCAGGTCCATGGGCCACCCTGGTGGGTCAGTTTCTCCTTAGCCTGATGATACCTCCTTAGCTGTGTGGCTCTGATGACACTGAGACCCTCCACAGTGGTGGGAGTCATTAATTCAGTAAGCTTTCGGAGTTCTGATACATGACCTCCTTTCCCCCAAAGACCGAGGCACATCCCAAAGCAAGGCTGTGTAGATAGTGACTTAAGAGCCCAAGAAAGCATGAGCTAGGCCTGTGTGACTCTAGGTCTCACCCTGGCACAGCCACAGCCTAGATGGCCCCAGATTGCATGCTGTCCACATGGATGCTGGCAGGCAGTCGGATTCTCGCCTGTTGTCATTGCTGAAGGAAGAAAAGGGAAACTCAGGTGACTTAGCTTCAGAGCAGTCAAAGGCAGGTAGGAAAGATTATAAACCTTGCTTTTGTTTTGTTTTGTTTCTCAAGAAGTCCCCGAGGTTAGTTTTATTTACCCGATTGTAAATTCCGAAACCCTTGGTGGGACTGGCCAGGTTTTCTGTAACTGCTTCCTAGAAGCCGTCAGCCGTCGAACGCTGTGATGGCCGGGTAGAGGCTTCACATTTGTCCTGGGTCAGAGAGGCTATGGTTCAACTTGGTGTTCTTGAAAGCTAATTAAATAATTTCTGACAGCCGGTGGCAACAGACCCCAGGATGCATGAGGAGAGGGCTTACCTCTTGTCTGATGGCCTCGTTCTGTTCTTAGTGACATTTATTAGAATAAGCAGTCCGTGACAGCACCAAGAGCTCCCTGGTCATTCTCTGAAGGGGCCTAACAACACAGACTGTCAGCAGAGCTGGGGACAGGACGGTAACCACAACTGCAGTGTGAAGGCTTAACTGAGGGAACTAGGAATTACCAAGAAGGAAAGATGGATAGAAGCAGCTATTCGTGTGCAGCTGTCTGTCGGTGTCTGTTTGGGTGTCTGGTATGCACTCACACTGACTCAGGCCTACTAGCAATCAGACATCACTTAACATTTGATTAGGTGCAGCAGGTCTGCGGATGTGATCTAGATGCTTTCGAGTTCCCAATAAGATAAAGAAATGGGATGTTTCTGCCTAAAAGATGGGCGTGGACTAAGCTTAGCCCAAGTTACCTGTATCATTCTGTCTTCTTTCAG
Seq C2 exon
AAAAAGTGAGCAAAGAACACAATCACACGAAAGAAAACACCATGCGGACGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697:ENSRNOT00000015929:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.728 A=NA C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]