BtaINT0166413 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031869 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr23:30161123-30165603:-
Coord C1 exon
chr23:30165486-30165603
Coord A exon
chr23:30162025-30165485
Coord C2 exon
chr23:30161123-30162024
Length
3461 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTATATGCTTAATGTTTCAGGGG
3' ss Score
8.46
Exon sequences
Seq C1 exon
GACCCAAACCAGGCAAAGAAACAGGAAGTGCTCATGGAGAAGACAGCCCCTGGAAAAGCCACGCCAGAGCGGCAGGTCCAACCTGAAGGTGACGTTCCACAGCCCGAGAGAGAGAAGG
Seq A exon
GTAAGAAGACTGCATCTTCGCATGTGAGATTTGTGGTTCTGCCTGGAGGCCTTGCTCGGCACCCTTGGCATTTTACTTTTTTGTTTTTGTTTTGAGTCAGGTTTATTGAGGTTAGTTTACATGCACTAAAATTCACTCTTTGTAAGTGTACAGGCCAATGAGTTTTCACAAACATGAAATAATGACAGTTGTCTAATCATCACCACAATCAAGACAGAGAAGTTTCCATCGCCCCAGACATTTCCTTTTTCCCTAACCCTTGTTTCTGTTTTTGAGTGTTTCTAGTTTGGTTTTTTCTGTTTAATTAAAACTGAATCCTTCTCCTGTGTGAACCTTTACCTTCCTCTTCTCCCCATTACTGGGGGGTGGGGGTGTGAATTAAAAAGGAGTGCTTGTTTCTCTCCCAAGGGAAAGAATGGCAGCCACATGATTCACTGCTTATTTTTTCTTACCACCTTTCAGTTATTGTAAATGACTACTGCCTTTTATTTCTAAATGTTGTCTGGATTTTCTTTTGTTTTTTTCTTTTTGCTCTAGACTCTGAAATCTCTCTTTCTAATATTTATCCCTTTCATTCTTCTTCTCCTCTTTCCAGTCTGGTACAAGCCCTGTTTCTCTTTTTTGTTTTACCGTCTCTCATCTTGGTGCTTCCGCTAAAGTTAAATTACCTCTTGTTCATTCTCCACCATTTAAACACATTCATTACTGTTGCTCCCCTCCTTGAAGACCTTCAATGAACTAAGAAACAACCCATCACCTTCAGTCACTCCCAATAGCTCCTAACAGAAGCCTCACCTAGCATATTCTGGCACTTGCAGACCTTGCAGCCTCGTATTCCCTGACATAATCAGCTTGCTTCAGTTTGCTGGAGACTTTTCATTCCAACTATTCCATGTGCTGGGAAACCCCTCATTCCCAGACACACTGGGACAATTAGTCATCCTTGGTTCCATCAGCTCTTACGTGTGTTTCTCCTCATGCTGAGTCCCTTTCCCGCCTTGTCTGTCTGGAATACTTTTTCCTCACTCTCGCTGGCTAATTCCTACTCCTCCTTCACAGCTAGCTTAGATATCACTTTCTCTGTCCTTCCTAAATCCCCCCAAGTCTAGATCAGTTTCCCCACCTCTGCTGCTAAAGCTACCATAGAACTGATCATATTATATTAGAATTGCTGGTTTACTTCTCTTTTTCTCCTGCCAGAACCAAAGGACAGGGCTTTGTTTTGTCTCCTGAGTCTGCTACCATCCCGCGCCTAGAGTAGACCTTCAGTATATATCTATTTGATGCATGGCTGATTTCAATTGTAAAGCCTTCTTTTACTTACTACCTGGTTCCCCTGTGCAGTTTCTGAGTATACTTCAGAATTCCTCTTCTTCTGGAAGCTTTCTGAGTAAAGCAGCCAAAAGAGACAGGCCTACTTTTTCTAAACAGCCTTGCAGAAATGAATTTATGCCATGTAATCAATGATGGGTATATATTTTAAATATAAAAAGTAGATTTAACAACAGTAGATTCTTGAAATTGTTCCTTACTTTCTAGATCTGTTGAAAAATGTTATTTTACACTCAGAGTTCAGGTTGTTTTTCAGTTTGGGAGGCCCCTGCATTCCCTTTTAGTTGTGTGTGTCATTCTGTCCTCATGGAAAAGGCTGTTCTCTCACTCCCTCCCCGTGGGGGCTATTCATCCTCTTGCCAAAGGCCTTTACACCCGATCAGGTTTCTCGTGTTTCTACTCTGCCTCCCCAACATGTGCTTTTACTCTCTCTGATACCTCCTCCCCCCACCCTTCATTTTCACTTTCTCACTGACTCTCACTTTTGAAATGTTCTGCTTGCTATCTTTATCTTGCTCACACAGAGTAAGCTTCATTTGTTTGTTATTAGTGCTGTTTAGACTCTCTCTCTTCTATTTTCTCCATCCACTTCTCCTTTTACTCTCATTCTGCTTTCCATCCCATTCATGCTCCTGGACTTCGTGCTCCTATCTGGTATTCCCTCTGACCCTCTCCCTGGTGTCTGAGCTAAGTTTTTATTCAGCAAACATTGTTTATTATCTCTTCTGTGCCACATCTATAAGCAAATGATTAAAGCAATGAACTATAATGGATCTACTGAACCACACAGGAAAGCAGTTTCTGCTGTCCAAGGAGATCAGGAAAGGCTAACACATTTTTGTGGACTTCATGTTACCCTCAAGGTCTTGTGGCCCAGTGTTTTTTTGATTTATTGGTGAGGACATTGAGCCCAGGGGATTTAAATCACCTAAGAAACACAGCTAATCAGTGATAAAATTGGCACCATGTCTGCATGCCTTCATTTCCAGTTCATTTCTTCATTTCTGGTGCTATCCCTTTCTCTTATTTGCCCTGGGTATTTAATTGACCTAGCTTTCTAATTTCCACATGGCAGACCATTATCAAGAACATACAGCTGTCAGCTGTACAGCAAAGTGAATCAGTTATATGTATATCCACACTTAAAAATTTCTTTTATTGGTGTCTAGTTGATTTACAATGTCATGTTAGTCTCAGGGATACAGTTTGGTGAATCAGTTATGCATATTCATATGTCTGTTCTTTTGTGGATTCTTTTCCCACACAGGCCATTACAGAGTAGAGTTCCCTGTGCTATACAGTAGGTCCTTATTTGTTTAATCTCACTTTTAAATACTTCCAATTGTATGTTCTTTTCAGACCCTGCAATTCTATATGCTTTTTCTTCAATTTTGAGACCAGTGATCTCATCATTTTGCCTAAGTTAACTGAAGTTTTTAAAGTAATATAGCCATTATAAATTATTCAAAAACTTAAGTTGTATAATATACTCTTATTTCCTGGTTTTGCCTGGTGGTTGATGTTTTATGGTAATTTATAGAAAACTAGATTAGCAAAAAGTTCTCAAAGATAAAATTATAACAATCATTTTTTTCTTCTGTGTCACTGCCATGTCTGGCACAAACTTTACGTTATTTTCCCACTACTTGTTTATAATTCTGTCTCTCCTTTAAAAAGAGTTCATAAAAAATAAGTTTTTATTCTACTTGATAACCTCAGTGCCTACAGTAATGATTGGCATTTAGGATGGGTTTAGGAAGGAAGGGATGAAGGCAGGAAAATGTTCAGTATTTTCTTCACTGAAGCCATAAGCAGATTTAAAAACAAAAAAGAACATAGAGCCCTGCCCTTTATGACTGTTGACTTGCTTGCTAACTTCTCTCTGTGTGTATTTATGCATATGTATCACATGACTTCAAACCATTTAAAATAAGTCATCTCTCACCATAATCCTCTCAAAGCAGCCACTGAGAAACATTTTTCTTATGTATCATTCCATATATGTTATATACAAACACAAACATCCACATTTCCATTTTGCACACATTCAGTTTTATCCTCCTAATTGCAGATTCCTTCTCCTGAGCACCAAAAAGCAAGTAATTGGTGTTATATGCTTAATGTTTCAG
Seq C2 exon
GGGAGGCGAAAAGGATTGAGAATGGGAAGCTGGTTGTAGAGACAGACTCCTGTGGAAGAGTGGAATCATCTGGGAAACCATTTGAACCCATGGAGGTTCATTACAAGGACTCTAACTTGGATAGGCAGCAGGCTGAGCCCAAGGAGAAGACTGACTGTAAATGCTCAGAATATGGGCAGGCATTCTTCCAGCACTCAGACCTGATTAAGCATGAAAGTTCACACAGGAAAGAAAAACTCTGTGAAGCTGAAGTGTGTCAGAGTTTGAGTCTTCCTGGACATCAGAAAATATGCTCTAGAGAAAAAGGTCATCAGTGTCATGAATGTGGGAAAGCCTTTCAGAGAAGTTCACACCTTGTCAGACATCAGAAAATCCATCTTGGTGAGAAGCCTTATCAGTGCAAGGAGTGTGGAAAAGTCTTTAGCCAGAACGCAGGCCTTTTGGAACATCTCAGAATCCATACTGGAGAGAAACCTTATCTATGTATCCACTGTGGAAAGAACTTTCGGCGCAGCTCCCACCTTAATCGACACCAGAGAATTCACAGTCAGGAGGAGCCCTGTCAGTGCAAAGAGTGTGGAAAAACCTTTAGTCAGGCCCTTCTCCTCACCCACCATCAGAGAATCCACAGCCACTCCAGAAGCCACCAGTGTAATGAGTGTGGGAAAACCTTCAGTTTGACATCAGACCTTATTCGACACCACAGGATTCACACTGGAGAAAAACCTTTCAAGTGTACTATTTGCCAGAAAGCCTTCCGATTAAACTCCCATCTCGCTCAGCATGTGAGAATCCACAACGAGGAAAAACCCTACAAGTGTAATGAATGTGGAGAAGCCTTCAGGCAGAGGTCTGGTCTTTTTCAACATCAGAGATACCACCACAAAAACAGACTGGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031869:ENSBTAT00000035587:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]