MmuINT0178704 @ mm10
Intron Retention
Gene
ENSMUSG00000022228 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:MGI Symbol;Acc:MGI:3531417]
Coordinates
chr13:21444534-21447894:-
Coord C1 exon
chr13:21447786-21447894
Coord A exon
chr13:21445830-21447785
Coord C2 exon
chr13:21444534-21445829
Length
1956 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATATATATTTACTATTTCAGGTA
3' ss Score
9.48
Exon sequences
Seq C1 exon
GACTCAGCCCAAAGAAGCAGACCAACGGTGCTGGTTGGCGAGCCAGCCCCTCGCAGGGAAGCACGGGAGCAGCCTGGGTGTGCGCTTCCTCAGAAGCCTGAGGAGAGAG
Seq A exon
GTAAGAACCAAATGGCATCTTTTTGCATTTGAATTATGGTAGGCCATGCAGTGCCTCTGCCTTGGCACTCGGCATTTTGGTATTTGTTTTTATTAGGCCTGTTGTGGCTTAATTTGTATACATAATCTAAACTGTAGCCTCTCTAGTCAGTGCAGGTTTTTGTTTTGTTGTTGTTGTTGTTTTGTTTGTTTTTGTATATACAATAAACTTAGTAACACAGTCAAGATTTAAAAGATCTACAACTCCAAACAATTTGAATGAACAACACACCAAGAAGTGGAGCTGAGCCTACCTGTTGCTCTTCCCTGAGGCAAAAAAGTCTCAGACAGAGTTTCCTTATTCCCTTTCCTAGCTCCTTCAAATCACTGTGAATGGCAGTGCTGAGGGTGGGGTGTTAATCAGTTTCTTTGGCTCTGCTTTGTTACTGTTCTATTTCTTACTTTTAGTCTCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCCCTCCCCTCCCCACCCCCTTCTTTTTTTTTTTTTTTTTTTTTTTTTGACACAGGGTCTTCCTGTGCAGCTCTGATTGATCTCAACTACAACTATGTAGATCAGCTGGCCTTGAACTCTCTAATGTCTTTGATGCTTTCACTAAGTTATGTTGTAGTCTTCTCTGTCACTTAAATACGAATGTATAGATGTCTCTCCTTGCTTAGATCCCTTAGTGAACTGGGAAATGCTATTCTGTTTTTTCACATGAAGTACTGTGGCCACATTGGGAAGAGGAACCGAGAGATAGAGCTTTCGCTCTCCTCAGGCAATAGCGAATTGTGCTGCGCCTCCCACTCACCCGCACTCTGTTGGCCTGTTTGTTTCCATTTCCCCTTCCTGTTTCTCTCTTCTGGCTCCCTCCTGCCTCATTCATTCTATCCCCTGCTCCAGGCTCCCCATTCACTCACTGTCTGGGTCAGTGTCCTCGCCTGCTCGCTCACGGGAAGTTAGCTTCCAGTTTCTGGCTTCTTTCTCTCTTTCCATAGTTAAAGAGCCAAGTTTTGTTTTGTGCCCTGAATCTGCTATAGATCCCCTCTGAGGGGAACAAATCATATTTCAACATGATGTTTTTGTGAATGCATTATTCTCAAGGTCTTATGCTCCCGGTACTGTTGATTTATTGTTAAGAACGTAAACACTTTTTCCAAGATTACATACTACTCAGTGATAAAATTGGCACCATGTCAACTCATCTTCATTTGTCAAAGTACCTTCCCTGCTTAACTTGATGGTCCTCGGGTGACCTGATTTATGGTGCTTTTTTGTTTCCCAGGTGACAAATCATGATCAAGAATATGCAGTCATGCTTAGTAGCTTCTGTGTGTGTAACATATGTCACATAATAAAATATAGAACATTTAAAATAAATCACCTCCCACCACAACCCCTGCCCTTCCCCAAAGCCAATCTGGTTAACACTTTCCCAGATGTCAGGCTGGACGTGGTGGTGCTGTAACTGTGGGACCTGAGAGGAGAGGATTAGGTTAGGCCATGTTATTCTGCATAGTGAAAACTTACCTCAAAAAAAACAAACAAAACCACAGTTTCTTGTAAATCACTCTTTATATATATATAAAATAATCATGAGCAAAATTTTGTTGTTGTTTTTTTACTTTGTGAGGATTGAAGCGATCTCATCTCTTAAGAAAACTTTTACAGAGGATCTGGTTTCAGTTCCTGTCAACTACATTGCAGCTCACAACATTCTGTAACTCCAGTTTCCGGGAACTGGACAGCCTCTTACGGTTTCCTTGGCACTGCATGCATGTTGTGTACATGCATACATGCAAATAAAACACACATAACATGTTTTTACATTTATACACATGGCTTTATTTAAGTATTTCCTGCTATTTGCAGATTCCTTTCCCTGAACACCAAAAATAAAATAATTAGTGATATATATATTTACTATTTCAG
Seq C2 exon
GTAAAGAGACAAGGAGTGAGAATGGGAATCTCATTGCAGGGACAGACTCTTGTGGAAGAATGGAATCATCTTGTACCATGACTGAACCCATTGAGGCCCAGTGTGAGGACCTGAGCTTGAAAAAGAATCCAGCCATGCCCAAGGAAAAAACTAACAGCCAATGCTTGGAAACTAAGGAGAGACTTGTTCAGAACTCAGGCCTGATTGAACATGACAGGGCACATACAGGAGAAATGTCCTGGGAATCTGTAGGATCTCAGAGTTCTGTTGCTGCTGACCATCAGGAAATCTCTAAAGACAAAGGTCATCCCTGCCAAGAGTGTGGGAAAGTCTTTCAGAGAAGTTCACACCTCATCAGACATCAGAAAATCCATCTTGGGGAGAAGCCTTACCAGTGCAAAGAGTGTGGAAAAGTCTTTAGCCAGAATGCAGGTCTTTTGGAGCATCTCAGGATCCATACTGGAGAAAAACCCTATCTGTGTATCCATTGTGGAAAGAACTTCAGGCGAAGCTCTCATCTTAATCGACACCAAAAAATTCACAGTCAGGATGAGCCCCGAGAATGCAAGGAGTGTGGGAAAACCTTTAGTCGGGCCCTCCTCCTCACCCACCATCAGAGAGTCCATGGTCGTTCCAAAAGACATCACTGTAATGAGTGTGGGAAAGCCTTCAGCTTGACCTCCGACCTTATTCGACATCATAGGATTCACACTGGAGAAAAACCTTTCAAATGTAATGTGTGTCAGAAAGCTTTCCGCCTAAATTCACACTTAGATCAGCATGTTAGAATCCACAATGAAGAAAAACCCTACAAGTGCAGTGAATGCAATGAAGCCTTCAGGCAGAAGTCTGGTCTCTTTCAGCATCAGAGACATCACCATAAAAGCAAACTGGCTTGATGAGGTTCTCTGTTTGAAACATGGAAATGTTACATTGATAAGCAAACAGCGCCTTTTGAAAGAACTCACGACGGCTTCAGGATTCTTGGAAGCCATTTGCCTCCGTTGTGTCCCTCTCTTGGCTTTACTTAAAGTCATAATTAGACTATAATAATTTACCAGAATAGCAGAATCAGAGTTAAACAAATATTCACTACAGAGCTTCTCAGAGCTTTCAGTGTGATAAGTACTTGATTATGTATCTCTTAAGTATTAGCTTTATGTGTGAATGAAGTGTTTGAAATCAGTAAGTCAAGTGCCTATAGATTTATACAGGACAAGATCAAGCTGATATTTTTGTAAGTACTGTAGCAACAGGCTCCTAAAACATAAAATTAATGAGGGTTGGGGATATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022228:ENSMUST00000110485:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.388
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGCCCAAAGAAGCAGA
R:
TTCTCCTGTATGTGCCCTGTCA
Band lengths:
342-2298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types