RnoINT0169491 @ rn6
Intron Retention
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45201600-45204788:+
Coord C1 exon
chr17:45201600-45201705
Coord A exon
chr17:45201706-45203692
Coord C2 exon
chr17:45203693-45204788
Length
1987 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GTATATATTTAATGTTTTAGGTA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GACTCAGCCCAAAGAACCAGACCGACTGTGCTGGTTGGAGAGCCAGCCCCTCATAGAGAAGCACAGGAGCAACCGGGGTTTGTGGTTCTGAAGCCTGAGGAGAGAG
Seq A exon
GTAAGAACAAAATGGCATCTTTTTGCATTTGAGTTATGGTAGGCTATGTAGTGCCTCTGCCTTGGCACCCATAGCCTTTTGATGTTTGTCTTTATCAGCTCTGTTGTGGCTTAATTTGTATACACAATCTACACTAGTCAGTGGAGGTTTTGTTTTGTTGTTTTGTTTGCTTGATTTTGTATATACAATAAACTTAACAGCACAGTCAAGATTTAAAAGATCTACAACTCTAAACAATTTGAATGAACAGCATACCAAGGAGAAGTGGAGCTGGACCTACCTGTTGCTCTTCCCTAAGGCACAGAATCTCAGGCAGAATTTCTTTATTTTTCTCCTATCTCCAAATCACTGTGAATGGCCATGCTGGGGAAGGGGGAGTTAAGATCAGTTTCTTTGGCTCTGATTTGTTACTTTTCTATTTCTTCTTTTGGTGCCTCTCTCTTCCTTTTTTGACACAAGGTCTTCCTGTGTAGCTCTGGCTGATCTCAACTTCAACTATGTAGGTTAGCTGGCCTTGAACTCTCCAGTGTCTTTGATACTTTCTCTAAGTTACCTTGTATTCTTCTCTGTCACTTAAATACAAATGTGTTGATGTCTCCCCTTGCTTAGATCCCTTAGTGAACTGGGTAATGCTATTCTGTTTTTTCACATGAAGGACTGTGGCCATGTCGGGAAGAGGATCAGAGAGCTATAGCAGCCCCTCCCTCCAGGCAATAATGAATTGTGCTATGCCTCCCACTCAGAGGCACTCTGTCAAGCCCAGTTCATTCCCATTTCCCCTTCCACTTTCCTTCTGGGTCCTTCCTGCCTCATTCACCCTATTCCTCCTTCCTGGTTCCCTACTGGCTTACTGTCTGGGTCTTCCTCACCTGTGTTCTCATAGGAAGTTACCTTCCGGTTTCTGGCTTCTTTCTCTCTTAGTTAAAGAACAAGGTTTTGTTTTGTGCCCTGAATCTGTTACAGGTCCTGACCTTGAGTAAACAGTACCTACTGCTAACTGGGTATTCTTACTTCTAAAGCTGACCTCTGCTGTCTTCTTCCCTGTTCAGTATGAGAAAAACTTGCAACATTTGAATAGGATAGGGAACATGCTGTTCCTTTCAGAAAGGAAGACTTCATATTTCAACATGATGCTTTTGTGAATGCATTATTCTCAAGGTCTTATGTTCTTGGTACTGTTGATTTATTGATAAGGACTTTACTCAGTGATAAAATTGGCACTGTGCAAACACATCTTCATTTCTCAAAGTACCTTCCCCGTTTAGCTTGGTGGTCCTCAGGTGACCTAGTTGATGGTGCTTGTTTTTTCCCAGGTGACTGATCATGATCAAGAACATGCAGGCATGCTTTTAGTAACTTCGTTATGTGTGATGTATACCACATAATAAAGCTTAGAACATTTAAAATAAATTACTCTCACAATCCCTGCCCTCCCCAAATCCAGCACAGTTAACATTTCTTGGGTCCAGCTGGATGGGCTGGCACATGGCTGTGATTGTGGGCCTTGAGAGCCTGAGAGAAGAGGATTGCTGTATGGTTTAGGTTAGGCCAGTTATTCTGCATAGTGAAACCTTACCTCAAAAAAAAAAAAAAAAACAAATGACCAAACAAACAAAACCACAATTTCTCATATATCACTCCATACATATATTTTAAATAATCATAAGCAAAAATTTTTTTGAGGGGGTGTTGAAGAGAGAGCTCATCTTATAAGAAAACTTTTACAGAGGACCTAGTTTCAGTTCCCAGTACCCACATTGCAGCTCACAACATTCTGTAACTCCAGTTTCAGGGAACTGGGCACCCTCTTATGGTTTCCTTGGTGCTACCTGCATGTTCTGTACATGTATTCGTGCAAATGAAACACTCACACATAACAATCTTTAATTTATACACATGGCTTTATTTATGTATCTCCTATTTGAAGATTCCTCTCCCTGAACACCAAAAATAAAATAATCAGTGATGTATATATTTAATGTTTTAG
Seq C2 exon
GTAAAGAGACAAGGAGTGAGAATGGGAAGTTCACTGGAGGGATAGACTCTTGTGGAAGAGTGGAATCATCCTGTACAATGTCTGAACCCATCGAGGCCCAGTGTGAGGACCTGAGCTTGAAAAAGTATCCAGCCATGCCCAAAGGAAAAACTAACAGTCAATGCTTAGAAACTAAGGAGAGACTTGTTCAGAACTCAGGCCTGATTGAACGTGACAGAACGCATACAGGAGAAAGGTCCTGTGAATCTGTAGTGTATCAGAGTTCTGTTGCTACTGAACATCAGGAAATCTCTAAAGAGAAAGGTCACCCCTGCCAAGAGTGTGGGAAAGTCTTTCAGAGAAGTTCACACCTCATCAGACATCAGAAAATCCATCTTGGTGAGAAGCCTTACCAGTGCAAAGAGTGTGGAAAAGTCTTTAGCCAGAATGCAGGTCTTTTGGAGCATCTCAGGATCCATACTGGAGAAAAACCCTATCTGTGTATCCATTGTGGAAAGAACTTCAGGCGAAGCTCTCATCTTAATAGACATCAAAAAATTCACAGTCAGGATGAGCCCCGAGAATGCAAGGAGTGTGGGAAAACCTTTAGTCGGGCCCTCCTCCTCACCCACCATCAGAGAGTCCATGGTCGTTCCAAAAGACATCATTGTAATGAGTGTGGGAAAGCCTTCAGTTTGACCTCTGACCTTATTCGACATCACAGGATTCACACTGGAGAAAAACCTTTCAAATGTAATGTGTGTCAGAAAGCTTTCCGTCTAAATTCACACCTAGATCAGCACGTCAGAATCCACAATGAAGAAAAACTCTACAAGTGTAGTGAATGCAATGAAGCCTTCAGGCAGAAGTCTGGTCTCTTTCAGCATCAGCGACATCACCATAAAAGTAAACTGGCTTGATGAGGTTCTTTGAAATATCGGGATGTTACATTGATAAGCAAACAGTGCTTTAAACACCAGGGCTTCAGTATTCTTGGAAGCCATTTGCCTCCATTGTTTCCCTCTCTTGACTTTACTGAAAGTCATAATTAATTAGACTATAATAATTTTACCCTAAGAGTGGAATCAGAGTTAAACAAGTATTCACTACAGAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518:ENSRNOT00000080047:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTCTGAAGCCTGAGGA
R:
CTTTCCCACACTCTTGGCAGG
Band lengths:
356-2343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]