HsaINT0186374 @ hg38
Intron Retention
Gene
ENSG00000197062 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr6:28272670-28278224:+
Coord C1 exon
chr6:28272670-28272787
Coord A exon
chr6:28272788-28276194
Coord C2 exon
chr6:28276195-28278224
Length
3407 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTATATATTTAATATTGCAGGTG
3' ss Score
8.05
Exon sequences
Seq C1 exon
GACCCAGACCAGCCAAAGAAACAAAAAATACTTGTGGAGGAGATGGCCCCTCTGAAAGGAGTACAGGAACAGCAGGTTCGGCATGAGTGTGAAGTTACAAAGCCTGAGAAAGAGAAGG
Seq A exon
GTAAGAATTGGATTGCATCTTCTGTGTGTGAGACGTGGTGGACTGTGCCTTTCCCTCTGAGGTTGTGCTTAGCACCCTTGTATTTTGTTTTTTGCTTTTGTTTTGAGTCAGGTTTACTGAAGCATAATTTATATGTAGTAAAATTCACTCTTTTTAGATGTACAGGTCAATGAGTTTTCACAAATGCGAAATAATTGTGGTCTAATCAGGACCACTATCAAGAGATAAGAGATATCTATCACCCCAAATATTTTAGCTGAACAAAATAGCAAGAAAAGGGTACAAAGGGAACCTGGACCTTCACCTTGCTCTTCTTCCTCTTACTGTAGGGGTGAATAAAAAAAGCAGTGCCAGGCCAGCTACTTGGGAAGCTAAGGGAGAAGGATCACTTGAGCCCAGTTCAAGGCTGCAGTGAGCAATGATTGTTGCACTGCACTTCAGTCTGGGCAACATCTCTTAAAAAAGCAAATAGTGGCCAGGCATGGTGGCTCATGCCTGTAAACCCAACACTTTGGGGGGCCAAGGTGGGTAGGTATACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGATGGTGAAACACTGTCTCTACTAAAAATACAAAAATTAGCCAGGTTTGGTGGCGGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAGAACTGCTTGAATCCAGGAGGCTGAGATTGCAGTGAGCTGAGATCACGCCACTACACTTCAGCCTGGGCGACACAGCAAGACTCTGTCTCAAAAAACAAACAAACAAAAAAAAAAACAAGTACTGCTAGTTTCTTAATCAAGGCAAAGAAAGCCACATGCTTCATTACTCATTTTTTAACATTTCCTTCAAATTATTGTAAATGGCCACTATCTTTCATTTCTAAACGTCACCTGGATTTTTTTTTTTTTTTGGTTCTATACTTTCTTTTTTGTTGTTTTTCTATTGAGACAGGGTCTTGCTCTGTCTTCAGGCTGGAGTACAATGGTGCAGTCATAGCTCACTACAGCCTTGACCTTCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCCAAGTATCTGGGACTACCGGTGTGTGTGCCACCACACCTGGCTTTTTATTATTATTATTTGTAGAGACAGGGTCTCCCTCTGTTGCCCTGGCTGGTCTCGAACTCCTGGTCTTAAGCATTTCTCCCATTTGGGCCTCTCACAGTGCTGGCATTATAGGTGCAAGCCACTCGCCCAGCCTCCTTTATTTTCTTTGTCACTGAAATTCTTCTTCCTAATTTTTGCTCCTTACATTTTTTCATTTCTTCTTTTTTTTTTCTGTCATAGAACTAATTACATTATATTGCAGTTTCTAGTTTGCTTCTCTTTTTCTCTTGCCAGACTAAAAGGGAAGGGGTTTTGTTTTGTTTTCTGAGTCAGCTACAGTCCCTGGCCTAGTGTAGACCCTCAATAAATGTCTGTTTGATGAATGACTGGTTTTATATGTAAAATCATGCTTTACATGCTACCTATTCCTCTGTTCAATTTCCAAGTCAGCTTCAAATTACCTTTCTTCTGGGAGCATCCTGAATAAAGTAGCTGAAAGAAAGGGGCCTACCTTTTCTCAATAGCCTTGCAGAAATGAATTAGCCTTGCAGAAATGATTACCATGTAATCAGTGATGGGTGTATAGTTTAAATACAAAAAGTAAATGTGGCTGCTGTAATCCCACTACTTTGGGAAGCCAGAGTGGGAGGATTGCTTGAAGCCAGATGTTTGAGACCAGCCTGGGCAACATAGTGAAACCCTGTCCTCTACAAAAAATAAATAAATAGCTAGGCGTGGTGGCATGCAGCTGTAGTTCTAGCCACTTGGGAGGCTGAGGCAAGAGGATTGCTTGAGCCCAGGAGTTCAAGACTGCAGTGAGCTATGTGATTGCACCACTGTACTCCAGCGTTGGCAACAGAGCAAGACCATGTCTCAAAAAAAGTGAATGTAATGTCAGTAGACTCTTGAAAATGTCCCTTACCCTCTGGATCTGTTAAAAATGTTATTTTATATTCAAAGTTCAGGTTGTTTTTTGGTTTCATCCTCTCTTGCTTTTTTAAAGTTGTATATGTGATTATGTCATTACTGGAAGAGTCTTATTCCTTTCCCTTAATCTCTCACTCTTGCCCCCTGCCCCTGTGTAGGACTGAATACTTCATTCTGTTGTAGAGGGTCTTTGTACACAGTACATTATTACATTATTTAATTTATTCACTCCCCACCTGTGACCTTCCTTTCTCTGATGTCTCCTTACTAATTCCTTCACTTTCACTTTTCCTTTCAGCTGTCATCCACTCTTTCCTTTTTACTTATCTGCTGAATTAACTTGCTCACACTGATTAACCCTCTTTTGTTTGTTATTAGTGCTGCTTAGAGTCTTTCTTCTATTTTCTCCATCCAGCTTTCCTTTTACTCTCTCATTCTGACTTTGCATCCCCAGTCATGCTCCTAGCCTTTGAAGAGTTATCCTTAGCTACAAGAAAAACTGGTAAATAAAAATATAAAATGAAACAAAACAAAAACTTCACATTCTTCTCACCCGTCTGCTTGTGTATCTGAGCTTAAGTTTTCTCTATTTTCATTTAATTTCACCCTTAGGACACAGGCCATTTATTTAGTAAACATTTGTTTAATGTCTGTTATGTACCAGGCTCTGTGCTAGAGAAAACAAAGTCTGCTCTGCATGTGCTTACAGTCTCTTGGGGCATTGTGCATCAGGGGTGCAGGGAGCGACAGACATGAATAAATTATCATAGCGTTGAGATTAAAGCTCTGTTGAACCACACAGGAGAGCAGTTACTGCTGTCCAAGGAGATTAGGAAAGGCGAAGGCATTTTTGTGAACTTCATGTTATTGTCAAGGTCTTATAGTACATTATTCTTTCTTTATGGATGAGGACACAGAGCCCAGATGATTTACCTTACTTTTTTAAGATTACACAGTTAGTGATAAAATTGGGCACCACATCTACATTTCTTCATTTTCAGTTAAAATGTCGTCCCTTTCTTATGGGCCCTGGGGGCCTCAATTAACCTAGCTTTTTTTATTTTCCATGTGACAAGTTATCTTCAAGACTGTACAGCCATGCCCTTTAAGACAGTTTATTTGCTTGCTTGCTAGCTTCTCTGTGTGTGGTATCCCATGATAAAATTTAAACTATTTAAAATAAGTCACCTCCCACCAGAATTCCCCATCTTTCCCCAAAGACAGTCACAGTTAACAATGTCTTGTGTACCATTCTGTAACTATTTTACGCAATCACAAGCATCCACAATGTTTTTACTTTGCACACATGGCTTCATTATATTTTTTTTTCCTTTTAGTTGCAGATTCCTTTCCCCAAGCATCAAAAGACAAGTAATTGGTGGTATATATTTAATATTGCAG
Seq C2 exon
GTGAGGAGACAAGGATTGAGAATGGGAAGCTTATTGTAGTAACAGACTCTTGTGGAAGAGTAGAGTCATCTGGGAAAATATCTGAACCCATGGAGGCTCATAATGAGGGCTCTAACTTGGAAAGGCATCAGGCCAAGCCCAAAGAGAAGATTGAGTATAAATGCTCAGAACGTGAGCAGAGATTCATCCAGCACTTGGACCTGATTGAACATGCGAGTACACACACGGGAAAGAAACTCTGCGAGTCTGATGTGTGTCAGAGTTCCAGTCTTACAGGACATAAGAAAGTCCTCTCTAGAGAGAAAGGTCATCAGTGTCATGAGTGTGGGAAAGCCTTTCAGAGGAGTTCACACCTCGTCAGACATCAGAAAATCCATCTTGGTGAGAAGCCTTATCAGTGCAATGAGTGTGGCAAAGTCTTTAGCCAGAATGCAGGCCTTTTGGAACATCTCAGAATTCATACTGGAGAGAAACCTTATCTATGTATCCATTGTGGAAAAAATTTTAGGCGCAGCTCTCACCTTAATCGACATCAGAGAATTCACAGTCAGGAGGAGCCCTGTGAGTGCAAGGAGTGTGGAAAAACCTTTAGTCAGGCCTTACTCCTCACCCACCATCAGAGAATCCATAGTCACTCCAAAAGCCATCAATGTAACGAGTGTGGAAAAGCTTTCAGTTTGACCTCAGACCTTATTCGACACCACAGAATTCATACTGGAGAAAAACCTTTCAAGTGTAACATATGCCAGAAAGCCTTCCGACTAAACTCACACCTTGCTCAGCATGTAAGAATCCACAATGAAGAAAAACCCTATCAGTGTAGTGAATGTGGAGAAGCCTTCAGGCAAAGGTCAGGTCTTTTTCAACATCAGAGATATCACCACAAAGACAAACTGGCTTGATGAGGTGTTCTCTCCTTGTAGAACATCAGAGAAGGCACATTGACTAGCAAACAGCACTTTAGGAAAAGTCACCGTAGCCCACTGTGGCATCAGAAAATTCTTGGGGGCTGAGTTGGAGGCTCCCTGCCTCTATTCTCTCTCCTTTGCTTTCCTTGAAGTCAGCTTTGGACCACAATAATTTCACTGTAGATGATATGCTAGGATCAAAGTTAAACAGCATTCTTCACTGCAGGACATCTCAGAGCATGTAACATAACTGCATGATTATATACTCTAAGCAATAGAGAGCTTCATGACTGAGTAAGAGTTTTGAAGTCAGCAGTGAATCAAGTGCCCACAGATTTGCAGGCTTAAGCAGAACAAGGGAAGATTGATATTTTTGGATATGCTATAGCAGCTTTCTCCTATGAAATAAAACTGATGATGTTTGGAAGTATACTACTCTCAAAGGTGTCTTTAAAGTACAGGTTAATGGTGAACATTTTCCCCCAGTGGCTTCACCTCATTCCTCCCACTGGCCTTACCCCTTCCTTCCCCAGTGGAAGCATTTTCAAAAGCAAAGATAATTTTCGCTGGTGAACTTCAGAACTTGCCTTCAGGGTTAGCTTCATGTAATTTTACCATTTCCCATCCCCATTCCCCACCACATTATGTCAAGATTCAAGTTATAAATTAACGTTTTACTTAGACTTTGAAAGAGATTTCATGAGTAATTTGAATGAACCTTGCTGAATTAATCTGAATAGCAACTGTCTGACTTGATAACTCCAGTGCCAGTATAGTGGCTGCTGCATAGACACTATTCAGTAAATGTCTGATGAAAGAAATTGGACTTTTTCCCTTTAATACTGATGATGCAATTTTGAAATGTTGCTTGTTCTGGAATACTTCGGAAGTTAAACAATAAAGTCAGCTTGGAGAGGAGATCATGATCTTTATACTGTGAATAGCAGAATGTCACAGATGAAGAATATTAAAATTAGGGGCGTCCACTCCAAAACATATCACCAGAGTGACAACTTCAGCCCTCAGCCTCTGCAATCCATATATATCCTGGTCTTGGGAGTCCATAGAATACTGTTTCCTTCTAATAAAGGTTTCAAACAAATCCCTGCAGATTTATTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197062:ENST00000619937:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains