DmeEX6015372 @ dm6
Exon Skipping
Gene
FBgn0035815 | Snmp2
Description
The gene Sensory neuron membrane protein 2 is referred to in FlyBase by the symbol DmelSnmp2 (CG7422, FBgn0035815). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3L:7733250..7743041. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; pain response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, in adult male stages.
Coordinates
chr3L:7736109-7738244:-
Coord C1 exon
chr3L:7738107-7738244
Coord A exon
chr3L:7736609-7736869
Coord C2 exon
chr3L:7736109-7736541
Length
261 bp
Sequences
Splice sites
3' ss Seq
TCTATACATAATTATTTCAGTCT
3' ss Score
3.71
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCATTTTTACAAGTATTCGAAAGGGAAATCACAGATATCTTTCAGGGATTTGCCAATAGGCTTAACTCTCGATTGAATCAAACGCCAGGCGTACGAGTCCTGAAACGATTGATGGAACGTATTCGAGGGAAACGTAAA
Seq A exon
TCTGTGCTGCAGATCTCTGAGAATGATCCTGGACTGGCTTTATTGCTAGTCCACTTGAATGCGAATCTGAAGGCTGTCTTCAACGATCCAAGATCGATGTTTGTGAGCACTTCTGTAAGGGAATATCTTTTCGATGGAGTACGATTCTGTATCAATCCGCAAGGAATCGCCAAGGCAATTTGTAACCAGATCAAGGAAAGTGGATCGAAAACAATCAGGGAGAAGAGCGATGGCAGCTTGGCATTCTCATTCTTCGGTCAT
Seq C2 exon
AAAAATGGTTCTGGTCACGAAGTATACGAGGTGCATACTGGAAAAGGTGATCCTATGAGGGTATTGGAGATTCAAAAACTGGATGATTCGCACAACCTGCAGGTGTGGCTGAATGCCAGTTCAGAGGGCGAAACTTCGGTTTGTAATCAAATCAATGGCACTGATGCATCCGCATATCCGCCATTTCGCCAACGAGGGGATTCGATGTACATTTTTAGCGCAGATATTTGCAGATCGGTGCAGTTATTCTACCAAACCGATATACAGTACCAGGGTATACCTGGATATAGATACTCTATTGGCGAGAACTTTATCAACGACATTGGTCCGGAACATGATAACGAGTGCTTCTGTGTTGACAAATTGGCGAATGTGATCAAGAGGAAAAACGGATGTCTATATGCAGGGGCCTTGGATTTGACCACCTGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0035815-'4-5,'4-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(21.8=80.4)
A:
PF0113016=CD36=FE(17.5=100)
C2:
PF0113016=CD36=FE(29.3=100)
Main Inclusion Isoform:
FBpp0290423
Main Skipping Isoform:
FBtr0301205fB732
Other Inclusion Isoforms:
FBpp0110185, FBpp0306711
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTGAATCAAACGCCAGGC
R:
CCGATCTGCAAATATCTGCGC
Band lengths:
307-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)