GgaEX0003906 @ galGal4
Exon Skipping
Gene
ENSGALG00000003018 | SCARB1
Description
scavenger receptor class B, member 1 [Source:HGNC Symbol;Acc:HGNC:1664]
Coordinates
chr15:4513049-4514117:+
Coord C1 exon
chr15:4513049-4513190
Coord A exon
chr15:4513513-4513716
Coord C2 exon
chr15:4514022-4514117
Length
204 bp
Sequences
Splice sites
3' ss Seq
GGGGTTGGTTTCCTTCACAGGGA
3' ss Score
8.01
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGAGTTCAAGTATAAGACAAACATCACTTTCCATGACAACGACACCGTCTCCTACCTGGAGTACCGGCAGCTCTTCTTCCGGCCAGACTTGTCCAACGGCACTGAAGATGAGTACATCGTGATGCCCAACATCTTGATGTTG
Seq A exon
GGAGCAGCTGTCATGATGGAAAACCTGCCTAGTTTTGTGAAGCTCTTGCTGAGCGGGGCCCTGGCTGGCCTGAAGCAGGAGGCCTTCATAAACCGGACAGTGGGGGAGATCTTGTGGGGCTATGAAGACCCTCTTTTAGACACCATAAATGCCCTTGTCCCTGGCCTGATCCCATACAAGGGGAAATTTGGCATATTTATAGAG
Seq C2 exon
TTTAACAACACCAATTCTGGATTGTTCACAGTGAACACAGGCATGAAGAACATCAGTCAAGTTCATATGGTGGATTCATGGAATGGCTTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003018_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.4=100)
A:
PF0113016=CD36=FE(14.9=100)
C2:
PF0113016=CD36=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATAAGACAAACATCACTTTCCA
R:
TTTCAAGCCATTCCATGAATCCAC
Band lengths:
228-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]