DreEX6089852 @ danRer10
Exon Skipping
Gene
ENSDARG00000101557 | scarb1
Description
scavenger receptor class B, member 1 [Source:ZFIN;Acc:ZDB-GENE-031126-1]
Coordinates
chr10:44863915-44867162:+
Coord C1 exon
chr10:44863915-44864056
Coord A exon
chr10:44866711-44866914
Coord C2 exon
chr10:44867067-44867162
Length
204 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGCTCTTTCCTCAGGGA
3' ss Score
10.85
5' ss Seq
GATGTGCGT
5' ss Score
4.37
Exon sequences
Seq C1 exon
AGAAAATCGCTGGAAGGACAACATCACGTTTCATGAAAACCACACGGTGTCATATAAGGAGTATCGTCAGTATTTCTTTGAGGAGAGCATGTCTGTGGGCGACGAGTCTGATGTGGTCACCATCCCTAATATGCTGGTGCTG
Seq A exon
GGAGCATCAGTGATGATGGAGAACATGCCGTTTCCCGTCCGCCTTCTGCTCAGCACCACCTTCAAGACCTTTAACGAGGGTCCGTTCCTGACCAAACCAGTAGGAGAGCTGATGTGGGGCTATGACAGCAAACTAGTGGACTTCCTCAACAAATACCTGCCCGGCATGCTCCCGTCCAGCGGCAAATTCGGCTTATTTGCTGAT
Seq C2 exon
TTTAATAACTCCAACACGGGGCTGTTCACCATCTTCACCGGCCGAGACGACATCCGCAAGGTGCACATGGTGGACTCCTGGAACGGCCTCAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101557-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.4=100)
A:
PF0113016=CD36=FE(14.8=100)
C2:
PF0113016=CD36=FE(6.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAATCGCTGGAAGGACAACA
R:
TTTTTGAGGCCGTTCCAGGAG
Band lengths:
237-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]